Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12g19
         (452 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g47460.1 68416.m05161 SMC2-like condensin, putative similar t...    31   0.28 
At2g35330.1 68415.m04332 zinc finger (C3HC4-type RING finger) pr...    28   2.6  
At4g17620.1 68417.m02636 glycine-rich protein                          27   5.9  
At3g26170.1 68416.m03265 cytochrome P450 71B19, putative (CYP71B...    27   5.9  

>At3g47460.1 68416.m05161 SMC2-like condensin, putative similar to
           SMC2-like condensin (TITAN3) [Arabidopsis thaliana]
           GI:14279543; contains Pfam profiles PF02483: SMC family
           C-terminal domain, PF02463: RecF/RecN/SMC N terminal
           domain
          Length = 1171

 Score = 31.5 bits (68), Expect = 0.28
 Identities = 14/46 (30%), Positives = 29/46 (63%)
 Frame = +1

Query: 313 LTEQKLNFITEVDSAHTKVKELNXKVNQYNEEIKQYKADLIVKDNK 450
           L +Q  +    V +A T++K+LN K++   +E+K+ K+ L+ K ++
Sbjct: 396 LEDQLRDAKISVGTAETELKQLNTKISHCEKELKEKKSQLMSKQDE 441


>At2g35330.1 68415.m04332 zinc finger (C3HC4-type RING finger)
           protein-related contains weak hit to Pfam profile:
           PF00097 zinc finger, C3HC4 type (RING finger); weak
           similarity to RING finger protein 8 (Swiss-Prot:O76064)
           [Homo sapiens]
          Length = 738

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +1

Query: 319 EQKLNFITEVDSAHTKVKELNXKVNQYNEEIKQYKA 426
           +QK+    E+ +   K+K LN  + Q  +E K+Y+A
Sbjct: 533 KQKMKLQDEITAEKEKIKALNRALAQITQEEKEYEA 568


>At4g17620.1 68417.m02636 glycine-rich protein
          Length = 544

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 97  DGPPKKSPFDELSRED 144
           D PPKK+P D+L  ED
Sbjct: 2   DSPPKKNPMDDLFGED 17


>At3g26170.1 68416.m03265 cytochrome P450 71B19, putative (CYP71B19)
           Identical to cytochrome P450 71B19
           (SP:Q9LTM4)[Arabidopsis thaliana];similar to cytochrome
           P450 GB:O65784 [Arabidopsis thaliana]
          Length = 502

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -3

Query: 126 IKRTLFWW--SILTRMVLNRFHHEIDFLVRSK 37
           + ++LFW   SIL R+ L +  HE DF+ + K
Sbjct: 169 LSKSLFWLTASILFRVALGQNFHESDFIDKEK 200


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,134,953
Number of Sequences: 28952
Number of extensions: 81084
Number of successful extensions: 248
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 742437000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)