Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12g18
(527 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56731| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.007
SB_18314| Best HMM Match : NUDIX (HMM E-Value=2e-05) 38 0.007
SB_29786| Best HMM Match : I-set (HMM E-Value=0) 31 0.59
SB_55733| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00036) 30 1.0
SB_13937| Best HMM Match : zf-CCCH (HMM E-Value=0.0017) 30 1.0
SB_58206| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20) 29 3.1
SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 28 5.5
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_6270| Best HMM Match : Vicilin_N (HMM E-Value=0.11) 27 9.6
SB_48435| Best HMM Match : Ion_trans (HMM E-Value=1.7e-11) 27 9.6
SB_38623| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_3438| Best HMM Match : RVT_1 (HMM E-Value=1.3e-30) 27 9.6
SB_2495| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.2e-11) 27 9.6
>SB_56731| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 152
Score = 37.5 bits (83), Expect = 0.007
Identities = 20/54 (37%), Positives = 30/54 (55%)
Frame = +2
Query: 74 LRAAGLVIFRNYNQIIQFLLLQTSYGEHHWTPPKGHVDPGETDWMTALRETKEE 235
++ AG V FR + + LL+ +S W P G ++PGE TA+RE +EE
Sbjct: 100 VKRAGCVCFRTELEK-EVLLVSSSKHPDKWVVPAGGIEPGEEPKETAIREVQEE 152
>SB_18314| Best HMM Match : NUDIX (HMM E-Value=2e-05)
Length = 169
Score = 37.5 bits (83), Expect = 0.007
Identities = 20/54 (37%), Positives = 30/54 (55%)
Frame = +2
Query: 74 LRAAGLVIFRNYNQIIQFLLLQTSYGEHHWTPPKGHVDPGETDWMTALRETKEE 235
++ AG V FR + + LL+ +S W P G ++PGE TA+RE +EE
Sbjct: 65 VKRAGCVCFRTELEK-EVLLVSSSKHPDKWVVPAGGIEPGEEPKETAIREVQEE 117
>SB_29786| Best HMM Match : I-set (HMM E-Value=0)
Length = 6300
Score = 31.1 bits (67), Expect = 0.59
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +2
Query: 287 LNYEVNGEPKTVVYWL--AKLKNPEQTVTLSSEHQ 385
L EV+G+PK VV WL +L P +TL +E Q
Sbjct: 2983 LEVEVSGKPKPVVEWLKDGELVKPSSLMTLETEGQ 3017
>SB_55733| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00036)
Length = 1211
Score = 30.3 bits (65), Expect = 1.0
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +2
Query: 344 KNPEQTVTLSSEHQDMKWLSLQEAQEISKYEDMRQLLAEFYEKCK 478
KN E + + QD+K + ++++ + KYED + + YE+ K
Sbjct: 77 KNSELEGKVEKQRQDIKRIKREKSEMVDKYEDELEEALDCYEESK 121
>SB_13937| Best HMM Match : zf-CCCH (HMM E-Value=0.0017)
Length = 1495
Score = 30.3 bits (65), Expect = 1.0
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +2
Query: 248 EDHLDIYKDINKTLNYEVNGEPKTVVYWLAKLKNPEQTVTLSSEHQDMKW 397
++ +D D ++ + V +PK + WL KN Q SSE +D KW
Sbjct: 690 KESIDKMMDNDQNKSQSVENKPKELPKWLQSQKN--QAPNSSSETKDSKW 737
>SB_58206| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 675
Score = 28.7 bits (61), Expect = 3.1
Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 3/100 (3%)
Frame = +2
Query: 149 GEHHWTPPKGHVDPGETDWMTALRETKEEAGLC-EDHLDIYKDINKTLNYEVNGEPKTVV 325
GE+ +PPK +D E + TA + + L E+ L + + + + + E +
Sbjct: 550 GEYEASPPKKTIDEEELSFPTAGQVSAPTRRLVDEEELSQIRGVTRMQSSRI--ERGELQ 607
Query: 326 YWLAKLKNPEQTVTLSSEHQDMKWLSLQEA--QEISKYED 439
+ +++ + E+ V Q KWL Q A +E+ KY D
Sbjct: 608 HAPSRIIDDEEIVIAPGAAQRQKWLIEQGAYTREVPKYID 647
>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
Length = 3489
Score = 28.7 bits (61), Expect = 3.1
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Frame = +2
Query: 194 ETDWMT-ALRETKEEAGLCEDHLDIYKDINKTLNYEVNGEPKTVVYWLAKLKNPEQTVTL 370
ETD T AL E+ G +DH+D+ + +K L E+N + + V L+++ ++ +
Sbjct: 2151 ETDAKTQALLESA--LGEYQDHIDMLERKSKELEEELNTKSEKEVEMLSRVNELQEELAK 2208
Query: 371 SSEHQDM-----KWLSLQEAQEISKYEDMRQLLAEFYEK 472
+ E + K L QE++ + + L + Y++
Sbjct: 2209 ALESAEAGKKAEKQLKEQESEHVELSREKEALQKQLYDR 2247
>SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 4248
Score = 27.9 bits (59), Expect = 5.5
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = +3
Query: 120 YNSYYCKHPTENIIGHHQKD 179
+N+ YCKHP ++G++ +D
Sbjct: 3667 HNNKYCKHPLLVVVGYNSRD 3686
>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6863
Score = 27.5 bits (58), Expect = 7.2
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +2
Query: 203 WMTALRETKEEAGLCEDHLDIYK 271
W+ L ++E LC DHLD K
Sbjct: 4749 WIAVLNSVQQEYELCSDHLDKVK 4771
>SB_6270| Best HMM Match : Vicilin_N (HMM E-Value=0.11)
Length = 535
Score = 27.1 bits (57), Expect = 9.6
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 182 VDPGETDWMTALRETKEEAGL 244
+DP E DW +LR T+ E+ +
Sbjct: 61 IDPTERDWKESLRRTRSESDI 81
>SB_48435| Best HMM Match : Ion_trans (HMM E-Value=1.7e-11)
Length = 1496
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = +2
Query: 77 RAAGLVIFRNYNQIIQFLLLQTSYGEHHWTPPKGHVDPGETDWMTALRETKEEA 238
R + V+ + ++++F+ +Q + W P G V+PG+ E EEA
Sbjct: 1145 RTSAGVMLQGGKKVLEFVAIQRK-DNNQWAIPGGMVEPGQLVTQALKAEFGEEA 1197
>SB_38623| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 127
Score = 27.1 bits (57), Expect = 9.6
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 182 VDPGETDWMTALRETKEEAGL 244
+DP E DW +LR T+ E+ +
Sbjct: 55 IDPTERDWKESLRRTRSESDI 75
>SB_3438| Best HMM Match : RVT_1 (HMM E-Value=1.3e-30)
Length = 1405
Score = 27.1 bits (57), Expect = 9.6
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +1
Query: 310 TQNCCVLVGKA*KS*TDSHPFI*TPRY--EVALIARSTGNIKIRRHETI 450
++N CV +G ++ T+ FI TP Y E + + G +K H T+
Sbjct: 211 SRNACVKLGLVVRADTNVEEFIPTPDYRTEFPKLFKGLGKMKTEYHTTL 259
>SB_2495| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.2e-11)
Length = 2024
Score = 27.1 bits (57), Expect = 9.6
Identities = 17/77 (22%), Positives = 33/77 (42%)
Frame = +2
Query: 215 LRETKEEAGLCEDHLDIYKDINKTLNYEVNGEPKTVVYWLAKLKNPEQTVTLSSEHQDMK 394
L+E + LC ++ +D N+ + EVN V AK+ E ++ ++ +H D
Sbjct: 436 LQEQISQLKLCAVEVEGLRDDNERVQREVNRLKFQVQEKTAKISEHEHSLRMARQHGDKL 495
Query: 395 WLSLQEAQEISKYEDMR 445
L + D++
Sbjct: 496 QYDLAACRSSKSVSDVK 512
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,449,747
Number of Sequences: 59808
Number of extensions: 271604
Number of successful extensions: 965
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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