Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12g18
         (527 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705395-1|AAU12504.1|  569|Anopheles gambiae nicotinic acetylch...    23   8.4  
AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.         23   8.4  

>AY705395-1|AAU12504.1|  569|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 2 protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 8.4
 Identities = 22/94 (23%), Positives = 34/94 (36%)
 Frame = +2

Query: 152 EHHWTPPKGHVDPGETDWMTALRETKEEAGLCEDHLDIYKDINKTLNYEVNGEPKTVVYW 331
           EH W   K   DP E   +T L    E   L     DI    N    Y V    K ++++
Sbjct: 89  EHEWQDHKFKWDPAEYGGVTELYVPSEHIWL----PDIVLYNNADGEYVVTTLTKAILHY 144

Query: 332 LAKLKNPEQTVTLSSEHQDMKWLSLQEAQEISKY 433
             K+      +  SS   D+++    +     K+
Sbjct: 145 TGKVIWTPPAIFKSSCEIDVRYFPFDQQTCFMKF 178


>AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.
          Length = 679

 Score = 22.6 bits (46), Expect = 8.4
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 201 SVSPGSTCPFGGVQ*CSP*DVCSNRNC 121
           S+SP  T P   V  CSP    S+ +C
Sbjct: 223 SLSPVHTAPAIPVSSCSPLSTASSASC 249


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 502,119
Number of Sequences: 2352
Number of extensions: 11106
Number of successful extensions: 11
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 48628785
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)