Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12g14
(503 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1147 - 34447519-34448042,34448126-34449092,34449458-344496... 35 0.043
05_01_0492 - 4102379-4103494,4104105-4104383,4105395-4105724 33 0.17
09_06_0184 - 21413275-21414267 31 0.40
04_03_1036 - 21895764-21895817,21895928-21895975,21896051-218961... 31 0.40
08_01_1010 - 10215625-10216335,10216372-10216473 31 0.69
10_08_0683 - 19860777-19861070,19861677-19861874,19862498-198626... 30 0.92
06_03_0874 - 25580417-25580419,25580504-25580604,25580828-255814... 30 0.92
12_02_0807 - 23341971-23342153,23342300-23342397,23342451-233425... 29 1.6
09_01_0066 - 978018-978500,978588-979034,979113-979412,979521-97... 29 1.6
07_03_1107 - 24024387-24024497,24025799-24026410 29 1.6
11_05_0015 + 18403367-18403729,18404500-18404565,18405121-184052... 29 2.8
06_01_0309 - 2233573-2234556,2234670-2234721,2235406-2236391,223... 29 2.8
07_03_1349 + 25951445-25951774,25953301-25953639 28 4.9
05_06_0063 + 25289117-25290643 28 4.9
03_06_0614 - 35099225-35099461,35099545-35099694,35099919-351000... 28 4.9
11_01_0590 + 4684652-4685296,4687327-4687466,4688222-4688768 27 6.5
11_01_0576 - 4608393-4609021,4610790-4610889 27 6.5
05_02_0139 + 7041030-7041188,7041451-7042215,7044133-7044519 27 6.5
01_05_0422 - 22018579-22018698,22019548-22019644,22019744-220199... 27 6.5
06_01_1129 + 9326975-9327071,9327174-9327306,9327408-9327479,932... 27 8.6
03_01_0389 + 3021849-3022136,3022237-3022753,3022835-3022988,302... 27 8.6
01_05_0024 - 17262504-17263308,17264251-17264399,17264879-172649... 27 8.6
01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863... 27 8.6
>02_05_1147 -
34447519-34448042,34448126-34449092,34449458-34449657,
34449867-34450051,34450130-34450228,34450316-34450357,
34450516-34450860,34450956-34451101,34451213-34451296,
34451424-34451502,34451596-34451675,34451824-34451875,
34451992-34452026
Length = 945
Score = 34.7 bits (76), Expect = 0.043
Identities = 32/101 (31%), Positives = 45/101 (44%), Gaps = 5/101 (4%)
Frame = +3
Query: 153 GDLYVAATEEDGVKSQWLTDASVNFLPATAASQKHETAFPSPFAASYPHEETVNKKKQAG 332
GDL + G + ++ +S + +P S E A PS ++ P + A
Sbjct: 511 GDLSFGSNAAPGQQDIFVPTSSHSEVPPANPSVHPEQAVPSYVSSQAPQPAAAGPQTHA- 569
Query: 333 APVQYAYAVPMTT----APNEGTSPYPYALPVSAFP-SQAS 440
AP +A P T+ AP G +PYP A S FP SQAS
Sbjct: 570 APASFASQAPPTSFASQAPQAG-APYPQA--ASTFPHSQAS 607
>05_01_0492 - 4102379-4103494,4104105-4104383,4105395-4105724
Length = 574
Score = 32.7 bits (71), Expect = 0.17
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = +3
Query: 300 EETVNKKKQAGAPVQYAYAVPMTTAPNEGTSPYPYALPVSAFPSQASESLIPCLDPA 470
+ T+ + + P + A+P APN P P + P S FP S + + PA
Sbjct: 250 QPTLPQPQHQAPPPSHPPALPALPAPNAPPPPAPQSQPPSQFPGHLPHSQVQSVPPA 306
>09_06_0184 - 21413275-21414267
Length = 330
Score = 31.5 bits (68), Expect = 0.40
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = +3
Query: 144 GSTGDLYVAATEEDGVKSQWLTDASVNFLPATAASQKHETAFPSPFAASYPHEET 308
G+ G ++ A + ++ +V+FLPA A E+ FPSP S P T
Sbjct: 52 GTPGS-HIGAVQAPASSLSSCSETAVSFLPAPALPTSMESTFPSPRPPSTPSSST 105
>04_03_1036 -
21895764-21895817,21895928-21895975,21896051-21896154,
21896624-21896721,21897838-21897916,21898039-21898102,
21898176-21898294,21898434-21898686,21899273-21899279,
21899956-21900013,21900300-21900353,21900863-21901055
Length = 376
Score = 31.5 bits (68), Expect = 0.40
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +3
Query: 339 VQYAYAVPMTTAPNE---GTSPYPYALPVSAFPSQASESLIPCLDPAKANIPQ 488
+Q A+ MT AP SP+P+A+P A P A+ S P P K PQ
Sbjct: 108 MQQAFKSMMTQAPPNTFGSNSPFPFAMPPQAAP--AAPSSYPYSQPRKDTSPQ 158
>08_01_1010 - 10215625-10216335,10216372-10216473
Length = 270
Score = 30.7 bits (66), Expect = 0.69
Identities = 28/99 (28%), Positives = 38/99 (38%), Gaps = 10/99 (10%)
Frame = +3
Query: 231 PATAASQKHETAFPSPFAASYPHEETVNKKKQAGAPVQYAYAVPMTTA------PNEGTS 392
P AAS + + P P AAS + + + A Y + P A P+ T
Sbjct: 111 PRRAASPDYTPSTPPPRAASPDYTPSTPTPPRRAASPNYTPSTPQRHAASPDYTPSTPTP 170
Query: 393 PYPYA----LPVSAFPSQASESLIPCLDPAKANIPQYSP 497
P A P + P AS P P +A P+YSP
Sbjct: 171 PRRAASLDYTPSTPPPRAASPDYTPLSPPPRAASPEYSP 209
>10_08_0683 -
19860777-19861070,19861677-19861874,19862498-19862659,
19862763-19862911,19863089-19863236,19863317-19863385,
19863471-19863719,19863937-19864131,19864444-19864560,
19864978-19866537
Length = 1046
Score = 30.3 bits (65), Expect = 0.92
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
Frame = +3
Query: 270 PSPFAASYPHEETVNKKKQAGAPVQYAYAVPMTTAPNEGTSPY---PYALPVSAFPSQAS 440
P P Y H + + P +AY P P SPY PY P +A+PS S
Sbjct: 59 PQPQPQPYAHH-SAPLQPYPPPPQHHAYPPPQPHPP----SPYVYDPYHAPAAAYPSYPS 113
Query: 441 ESLIPCLDPAKA 476
+ P + P+ +
Sbjct: 114 PNPSPSISPSSS 125
>06_03_0874 -
25580417-25580419,25580504-25580604,25580828-25581411,
25581523-25581594,25581667-25581793,25583412-25583516,
25583643-25583676
Length = 341
Score = 30.3 bits (65), Expect = 0.92
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +3
Query: 276 PFAASYPHEETVNKKKQAGAPVQYAYAVPMTTAPNEGTSPYPYALPVSAFPS 431
P SY H++ K A + VP+ P SP YALP + +P+
Sbjct: 132 PHGFSYVHQKNKPGKISAASTTHSVLPVPVPAVPYAAPSP-SYALPPAGYPA 182
>12_02_0807 -
23341971-23342153,23342300-23342397,23342451-23342521,
23342522-23342634,23342853-23342943,23343037-23343272,
23343915-23343959,23344113-23344226,23344306-23344369,
23345036-23345059,23345320-23345483,23345598-23345795
Length = 466
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 4/36 (11%)
Frame = -2
Query: 499 NGEYWGMFA---LAGSKHGIK-LSDACDGNALTGRA 404
NGE+WGMFA + G+ + L D DG ++TG++
Sbjct: 177 NGEFWGMFASTQVIGNLISLALLRDGKDGGSVTGKS 212
>09_01_0066 -
978018-978500,978588-979034,979113-979412,979521-979855,
980325-980703
Length = 647
Score = 29.5 bits (63), Expect = 1.6
Identities = 23/71 (32%), Positives = 32/71 (45%)
Frame = +2
Query: 71 SRDSTKRPESTPSSTWTLYQAFGRRIYGRPLRCRDRRRWSQIAMVDRCIRQLLTSHSSFT 250
+R +P S P+ LY+A RR + LRCR R R + + R R L + T
Sbjct: 56 ARRRPTKPASPPTGA-ALYRA--RRCRRKLLRCRARHRRHRDRCLHRAQRHLHRPATPST 112
Query: 251 ETRNCISEPLR 283
E +EP R
Sbjct: 113 EPSAAATEPYR 123
>07_03_1107 - 24024387-24024497,24025799-24026410
Length = 240
Score = 29.5 bits (63), Expect = 1.6
Identities = 28/80 (35%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Frame = +3
Query: 240 AASQKHETAFPSPFAASYPHEETVNKKKQAGAPVQYAYAVPMTTAPNEGTSPYPYALPVS 419
AAS + A P+P AA +KK A A A P TT P ++P P A P +
Sbjct: 16 AASASAQKATPTPAAAPATTPPASSKKTPAPA------AAPTTTTPPAASTP-PAAAPTT 68
Query: 420 -AFPSQASESLIPCLDPAKA 476
A P+ A P P KA
Sbjct: 69 PATPAPAEAPTTPA--PTKA 86
>11_05_0015 +
18403367-18403729,18404500-18404565,18405121-18405234,
18406109-18406297,18406335-18406667,18406708-18406743,
18407806-18407919,18408506-18408999,18409293-18409716
Length = 710
Score = 28.7 bits (61), Expect = 2.8
Identities = 25/94 (26%), Positives = 40/94 (42%)
Frame = +3
Query: 201 WLTDASVNFLPATAASQKHETAFPSPFAASYPHEETVNKKKQAGAPVQYAYAVPMTTAPN 380
+L AS PA Q+H+T++ P A +P P YA++ PN
Sbjct: 439 YLPPASHPSQPAAYVHQQHQTSYIPPLTA-HPMP-----------PESYAHSYAQMPPPN 486
Query: 381 EGTSPYPYALPVSAFPSQASESLIPCLDPAKANI 482
+ PY + + +P QA+ + L P+ NI
Sbjct: 487 MQFTTPPYHMSTAEYPYQAAHTAYSSL-PSANNI 519
>06_01_0309 -
2233573-2234556,2234670-2234721,2235406-2236391,
2237790-2238050
Length = 760
Score = 28.7 bits (61), Expect = 2.8
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +3
Query: 273 SPFAASYPHEETVNKKKQAGAPVQYAYAVPMTTAPNEGTSPYPYALPVSAFP 428
S A Y + ++ AG + AY VPM P +P P ++P++ FP
Sbjct: 575 SILAPFYANCTPLSLPSTAGDFMNSAYGVPMPHQPQHMGAPGPPSMPMNYFP 626
>07_03_1349 + 25951445-25951774,25953301-25953639
Length = 222
Score = 27.9 bits (59), Expect = 4.9
Identities = 16/61 (26%), Positives = 26/61 (42%)
Frame = +3
Query: 270 PSPFAASYPHEETVNKKKQAGAPVQYAYAVPMTTAPNEGTSPYPYALPVSAFPSQASESL 449
P+ A P++ + + + +Q A A T P+E T+P A P + E L
Sbjct: 140 PTATARGIPNKPPADIRSREDTVIQAARAELSTPKPDEATTPSAQPASAQAEPIEEDEEL 199
Query: 450 I 452
I
Sbjct: 200 I 200
>05_06_0063 + 25289117-25290643
Length = 508
Score = 27.9 bits (59), Expect = 4.9
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +3
Query: 177 EEDGVKSQWLTDASVNFLPATAASQK 254
++DG +S W +D+SV PAT +S++
Sbjct: 339 DDDGEESGWESDSSVASCPATLSSEE 364
>03_06_0614 -
35099225-35099461,35099545-35099694,35099919-35100066,
35100152-35100231,35100428-35100594,35100692-35100940,
35101025-35102310,35102423-35102544,35102946-35103272
Length = 921
Score = 27.9 bits (59), Expect = 4.9
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 14/87 (16%)
Frame = +2
Query: 56 LVCSGSRDSTK---RPESTPSSTWTLYQAFGRRIYGRPLRCRDRRR-----------WSQ 193
+V + + DS K R TPSS+ + R I GRP RCR RRR W++
Sbjct: 431 MVSTEAEDSPKNAARDVDTPSSS---PMSLRRMIEGRPDRCRLRRRIFNHQRSSSFEWAK 487
Query: 194 IAMVDRCIRQLLTSHSSFTETRNCISE 274
I+MV +R L + ++S + ++ S+
Sbjct: 488 ISMVQWAMR-LPSRYTSVADNKSFKSD 513
>11_01_0590 + 4684652-4685296,4687327-4687466,4688222-4688768
Length = 443
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 225 FLPATAASQKHETAFPSPFAAS 290
+L TA KH+T PSP AAS
Sbjct: 419 YLSETATGAKHKTTTPSPAAAS 440
>11_01_0576 - 4608393-4609021,4610790-4610889
Length = 242
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 225 FLPATAASQKHETAFPSPFAAS 290
+L TA KH+T PSP AAS
Sbjct: 218 YLSETATGAKHKTTTPSPAAAS 239
>05_02_0139 + 7041030-7041188,7041451-7042215,7044133-7044519
Length = 436
Score = 27.5 bits (58), Expect = 6.5
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +3
Query: 177 EEDGVKSQWLTDASVNFLPATAASQKHETAFPSPFAASYP 296
E GV+ W+T + + +P A + T FPSP P
Sbjct: 342 EGGGVRKSWMTASPSSPVPPRAPTSFPATIFPSPHMCLSP 381
>01_05_0422 -
22018579-22018698,22019548-22019644,22019744-22019908,
22022274-22022339,22022441-22022540,22022662-22023304
Length = 396
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 217 PSTSYQPQQLHRNTKLHFRAPSL 285
PS ++ + LHR KLH R PSL
Sbjct: 37 PSIPHRGRSLHRRLKLHPRNPSL 59
>06_01_1129 +
9326975-9327071,9327174-9327306,9327408-9327479,
9327593-9327736,9327950-9328021,9328219-9328278,
9328384-9328637,9329940-9330281,9332001-9332380,
9333867-9334235
Length = 640
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +3
Query: 165 VAATEEDGVKSQWLTDASVNFLPATAASQKHETAFPSPFAASY 293
V E DG+ +W + + A + S H T+ P+P AA +
Sbjct: 570 VRMLEGDGLADRWEKASGHSTAAADSLSHSHRTSDPAPPAADF 612
>03_01_0389 +
3021849-3022136,3022237-3022753,3022835-3022988,
3023076-3023166,3024556-3024627,3026366-3026689
Length = 481
Score = 27.1 bits (57), Expect = 8.6
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Frame = +3
Query: 330 GAPVQYAYAVPMT---TAPNEGTSPYPYALPVSAFPSQASESLIPCLDPAKANI 482
GAP+ + P T+P EG ALP P+ LIP DP +A +
Sbjct: 262 GAPIGFPEIAPHVYYFTSPLEGVQ----ALPFVPHPASPPAMLIPQFDPLRAEL 311
>01_05_0024 -
17262504-17263308,17264251-17264399,17264879-17264978,
17265829-17265953,17267565-17267743,17269648-17270698
Length = 802
Score = 27.1 bits (57), Expect = 8.6
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Frame = +3
Query: 126 IKPSVDGSTGDLYVAATEEDGV---KSQWLTDASVNFLPATAASQKHETAFPSPFA-ASY 293
+KP+VDGS ++VA + K + + + N P+ +K A P P A Y
Sbjct: 273 MKPAVDGSAAPMHVAEEQPPQTALEKEKAIEQLAANLPPSKPLIRKPPKAAPGPPAEVRY 332
Query: 294 PHEETV 311
H ++
Sbjct: 333 QHASSM 338
>01_03_0117 +
12684729-12685886,12685978-12686145,12686292-12686336,
12686438-12687280
Length = 737
Score = 27.1 bits (57), Expect = 8.6
Identities = 23/91 (25%), Positives = 33/91 (36%)
Frame = +3
Query: 231 PATAASQKHETAFPSPFAASYPHEETVNKKKQAGAPVQYAYAVPMTTAPNEGTSPYPYAL 410
P A + PSP + + + K P A+P T AP + P L
Sbjct: 119 PVGAPRSRVRAMPPSPSLSPPAKAPSHSHAKTPSMPPAERPALPPTKAPAAISPATPPQL 178
Query: 411 PVSAFPSQASESLIPCLDPAKANIPQYSPFH 503
+ S + P L PA+ +P SP H
Sbjct: 179 SPANAHSTHHHAKPPSLPPAEPPVPSPSPEH 209
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,298,773
Number of Sequences: 37544
Number of extensions: 312576
Number of successful extensions: 1048
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -