SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12g14
         (503 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21513| Best HMM Match : Extensin_2 (HMM E-Value=4)                  36   0.025
SB_11163| Best HMM Match : DUF1104 (HMM E-Value=1.7)                   33   0.10 
SB_12369| Best HMM Match : S-antigen (HMM E-Value=0.11)                33   0.10 
SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.18 
SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.71 
SB_37509| Best HMM Match : PAE (HMM E-Value=0)                         30   0.94 
SB_11869| Best HMM Match : Excalibur (HMM E-Value=8)                   30   0.94 
SB_59641| Best HMM Match : PAE (HMM E-Value=0)                         30   0.94 
SB_12742| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_52975| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.6  
SB_4617| Best HMM Match : Extensin_2 (HMM E-Value=0.38)                29   2.2  
SB_11346| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_51094| Best HMM Match : VWA (HMM E-Value=0)                         29   2.9  
SB_7052| Best HMM Match : LRR_1 (HMM E-Value=2e-12)                    29   2.9  
SB_46590| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.8  
SB_52935| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)                      28   5.0  
SB_30682| Best HMM Match : Formyl_trans_N (HMM E-Value=2.8e-08)        28   5.0  
SB_56913| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_41627| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)            27   6.6  
SB_23364| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_24271| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_7214| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.6  
SB_58248| Best HMM Match : Pox_A32 (HMM E-Value=0.97)                  27   8.8  
SB_49284| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     27   8.8  
SB_41973| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_11943| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 27   8.8  
SB_5602| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.8  
SB_20579| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.39)           27   8.8  

>SB_21513| Best HMM Match : Extensin_2 (HMM E-Value=4)
          Length = 484

 Score = 35.5 bits (78), Expect = 0.025
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
 Frame = +3

Query: 213 ASVNFLPATAASQKHETAFPS--PFAASYPHEETVNKKKQAGAPVQYAYAVPMTTAPNEG 386
           ASV+  P   A Q H+ +  +     A +PH+ +V+   Q  AP  +  +V  +TAP + 
Sbjct: 335 ASVSTAPQVTAPQPHKASVSTAPQVTAPHPHKASVSTAPQVTAPQPHKASV--STAP-QV 391

Query: 387 TSPYPYALPVSAFP 428
           T+P P+   VS  P
Sbjct: 392 TAPQPHKASVSTAP 405


>SB_11163| Best HMM Match : DUF1104 (HMM E-Value=1.7)
          Length = 282

 Score = 33.5 bits (73), Expect = 0.10
 Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = +3

Query: 150 TGDLYVAATEEDGVKSQW-LTDASVNFLPATAASQKHETAFPSPFAASYPHEETVNKKKQ 326
           T  L  AA +ED    Q  LTDA VN     A     ++  P  F A   HE    K+K+
Sbjct: 194 TSSLLKAAKDEDFKAFQSDLTDAVVNTAKPVARKVAEQSGLPDSFGAGLQHERPAQKEKE 253


>SB_12369| Best HMM Match : S-antigen (HMM E-Value=0.11)
          Length = 1123

 Score = 33.5 bits (73), Expect = 0.10
 Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = +3

Query: 150 TGDLYVAATEEDGVKSQW-LTDASVNFLPATAASQKHETAFPSPFAASYPHEETVNKKKQ 326
           T  L  AA +ED    Q  LTDA VN     A     ++  P  F A   HE    K+K+
Sbjct: 194 TSSLLKAAKDEDFKAFQSDLTDAVVNTAKPVARKVAEQSGLPDSFGAGLQHERPAQKEKE 253


>SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1850

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 29/82 (35%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
 Frame = +3

Query: 264  AFPSPFAAS-YPHEETVNKKKQAGAPV--QYAYAVPMTT-APNEGTSPYPYALPVSAFPS 431
            A P+P  AS YP ++      Q G P   Q   A P    AP      YP A P +A+P+
Sbjct: 1259 AAPAPAPASAYPSQDAAY---QTGYPAYQQGGQAYPSAAPAPAPAAQAYPSAAPATAYPT 1315

Query: 432  QASESLIPCLDPAKANIPQYSP 497
            QA  +  P   PA A  P  +P
Sbjct: 1316 QAPAN--PTAAPATA-YPAQAP 1334


>SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3142

 Score = 30.7 bits (66), Expect = 0.71
 Identities = 27/99 (27%), Positives = 48/99 (48%)
 Frame = +3

Query: 207  TDASVNFLPATAASQKHETAFPSPFAASYPHEETVNKKKQAGAPVQYAYAVPMTTAPNEG 386
            TD+S + +  T  S+   T   +    S  H  + +  + A AP    + +P T+     
Sbjct: 2889 TDSSYHSV--TQKSRLPSTTSSNSSRTSSIHVPSFHSTQPANAP----FTLPSTSRSFNT 2942

Query: 387  TSPYPYALPVSAFPSQASESLIPCLDPAKANIPQYSPFH 503
            +SP P   P+S++ S++S  + P LDP+  + P+ S  H
Sbjct: 2943 SSP-PSPKPLSSYFSRSSTDIPPLLDPSLPS-PKLSSSH 2979


>SB_37509| Best HMM Match : PAE (HMM E-Value=0)
          Length = 483

 Score = 30.3 bits (65), Expect = 0.94
 Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 6/29 (20%)
 Frame = +3

Query: 66  QGHVTQRNDPNQLHP------VHGLYIKP 134
           +GHV++R+ PN+ HP      +HG+Y KP
Sbjct: 363 RGHVSRRSLPNKPHPSWAYRHIHGIYCKP 391


>SB_11869| Best HMM Match : Excalibur (HMM E-Value=8)
          Length = 269

 Score = 30.3 bits (65), Expect = 0.94
 Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
 Frame = +3

Query: 240 AASQKHETAFPSPFAASYPHEETVNK------KKQAGAPVQYAYAVPMTTAPNEGTSPYP 401
           AAS   ET   SP+ AS P EE  ++      K++  AP   A A     A  EGTS   
Sbjct: 115 AASPSDETTTDSPWDASAPTEEAPSRDEAAAPKQEEEAPKDEAAASEEVAAATEGTSAAT 174

Query: 402 YALPVSAFPSQASES 446
                SA  ++  +S
Sbjct: 175 ETNDASAEVNETDKS 189


>SB_59641| Best HMM Match : PAE (HMM E-Value=0)
          Length = 1252

 Score = 30.3 bits (65), Expect = 0.94
 Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 6/29 (20%)
 Frame = +3

Query: 66   QGHVTQRNDPNQLHP------VHGLYIKP 134
            +GHV++R+ PN+ HP      +HG+Y KP
Sbjct: 1132 RGHVSRRSLPNKPHPSWAYRHIHGIYCKP 1160


>SB_12742| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1077

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -2

Query: 262 VSCFCEAAVAGKKLTDASVNHCDLTPSSSVAAT 164
           + C C+A   G  +T   VN C L  S  V AT
Sbjct: 502 IKCMCKAGYTGDGITCEDVNECQLPGSCHVHAT 534


>SB_52975| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1077

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 21/73 (28%), Positives = 31/73 (42%)
 Frame = +3

Query: 117 GLYIKPSVDGSTGDLYVAATEEDGVKSQWLTDASVNFLPATAASQKHETAFPSPFAASYP 296
           G   +   DG+  D   A T+E G  SQWL D    +   T A+     A  + + A+  
Sbjct: 385 GKLYRSGQDGAAIDR--AFTDETGYDSQWLPDDHPAYQEYTEATHSMGGAIGNVWRAAQV 442

Query: 297 HEETVNKKKQAGA 335
             +  N K+  GA
Sbjct: 443 ESKVWNSKENLGA 455


>SB_4617| Best HMM Match : Extensin_2 (HMM E-Value=0.38)
          Length = 450

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
 Frame = +3

Query: 165 VAATEEDGVKSQW---LTDASVNFLPATAASQKHETA-FPSPFA-ASYPHEETVNKKKQA 329
           +AA+++  +++Q    L     +  PA +  Q H +   PSP    +  H  +V+++  A
Sbjct: 111 IAASQQQQLRAQQQAALAAQQAHSQPAVSLPQPHPSPQMPSPAQLGAQSHPGSVSQQMHA 170

Query: 330 GAP-VQYAYAVPMTTAPNEGTSPYPYALPVSAFP 428
               +QY  +  +  AP     P P + PV+  P
Sbjct: 171 AQTRMQYVQSPAVMRAPTPAPHPSPASQPVAPSP 204


>SB_11346| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1706

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 20/91 (21%), Positives = 36/91 (39%)
 Frame = +3

Query: 213  ASVNFLPATAASQKHETAFPSPFAASYPHEETVNKKKQAGAPVQYAYAVPMTTAPNEGTS 392
            A V  +P  ++        P+P +    +    N   Q+ A ++ A  VP  T P+  T+
Sbjct: 1259 AGVKQVPIHSSPDILARVLPAPTSTPLMNVSIANPSNQSLANIKPALGVPAITVPHSNTA 1318

Query: 393  PYPYALPVSAFPSQASESLIPCLDPAKANIP 485
              P    V++ P   + +L+    P     P
Sbjct: 1319 SKPLTKTVTS-PLLPNSNLLVNTSPVSQTHP 1348


>SB_51094| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3544

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = +3

Query: 18   TMLKVLSILIVIYSCVQGHVTQRNDPNQLHPVHGLYIKPSVDGSTGDLYVAATE 179
            T +  LS+ + +Y CV GH T       LH +  +    ++  ST  L   AT+
Sbjct: 1688 TPVDALSLRVAVYGCVSGHYTP-----DLHMMLAISATSTIPASTFSLMSTATQ 1736


>SB_7052| Best HMM Match : LRR_1 (HMM E-Value=2e-12)
          Length = 1328

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 19/50 (38%), Positives = 27/50 (54%)
 Frame = +1

Query: 106  IQYMDSISSLRSTDLRETFTLPRQKKMESNRNG*PMHPSTSYQPQQLHRN 255
            I+ MDS S+L    LR+TF L R+K   ++ N   M  + S +   L RN
Sbjct: 905  IRSMDSSSTLEDNMLRKTFPLKRRKMSRASLNQ-KMLTNASVRVIDLSRN 953


>SB_46590| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 972

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 1/91 (1%)
 Frame = +3

Query: 228 LPATAASQKHETAFPSPFAASYPHEETVNKKKQAGAPVQYAYAVPMTTA-PNEGTSPYPY 404
           L A  A  +   +  S  AA   +  T+ +    G P QY Y +P     P++  S  P 
Sbjct: 572 LDADVAYHEESVSVASSSAAIPMYGSTMAQASLPGQPGQYQYVIPTQPGIPSQFLS--PG 629

Query: 405 ALPVSAFPSQASESLIPCLDPAKANIPQYSP 497
             P    P  +    +P   PA  + P Y P
Sbjct: 630 QAPHMVLPPGSPVQQVPGYQPAYLHTP-YQP 659


>SB_52935| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1333

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 105 HPVHGLYIKPSVDGSTGDLYVAATEEDGVK 194
           H + G++  P + G   D+  A  EEDGVK
Sbjct: 365 HEIVGVFTVPDIKGKP-DILAAGAEEDGVK 393


>SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)
          Length = 2442

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 27/115 (23%), Positives = 43/115 (37%), Gaps = 7/115 (6%)
 Frame = +3

Query: 129  KPSVDGSTGDLYVAATEEDGVKSQWLTDASVNFLPATAASQKHET-AFPSPFAASYPHEE 305
            KP + G+T    V++   D  K      A++ FL   A++    T +  SP   S   + 
Sbjct: 2012 KPKIGGATIKFGVSSETSDASKPSVADAAALGFLKVPASTPPDTTPSASSPADTSSSSKP 2071

Query: 306  TVNKKKQAGAPVQYAYAVPMTTAPNE------GTSPYPYALPVSAFPSQASESLI 452
            ++    +AG        +P    P E       T P P+A    A  +    S I
Sbjct: 2072 SIGDAAKAGFLKIPTAGLPKAEVPKETSTSTTTTQPLPFAFGTGAATTTDDNSAI 2126


>SB_30682| Best HMM Match : Formyl_trans_N (HMM E-Value=2.8e-08)
          Length = 146

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 105 HPVHGLYIKPSVDGSTGDLYVAATEEDGVK 194
           H + G++  P + G   D+  A  EEDGVK
Sbjct: 49  HEIVGVFTVPDIKGKP-DILAAGAEEDGVK 77


>SB_56913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1603

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +3

Query: 123 YIKPSVDGSTGDL-YVAATEEDGVKSQWLT 209
           +++ S+   TG + Y+ +TE  GVK+ WLT
Sbjct: 837 WLELSLPSKTGRVNYIFSTENPGVKADWLT 866


>SB_41627| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 188

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +3

Query: 390 SPYPYALPVSAFPSQASESLIPCLDPAKANIPQYSPFH 503
           +P+P  +  S+FPS   ++ +P     + N+P Y+  H
Sbjct: 31  TPHPAHISNSSFPSALLKTDVPINSLCEPNLPVYTDIH 68


>SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)
          Length = 1439

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 21/72 (29%), Positives = 27/72 (37%)
 Frame = +3

Query: 270 PSPFAASYPHEETVNKKKQAGAPVQYAYAVPMTTAPNEGTSPYPYALPVSAFPSQASESL 449
           P+P AA  P          +G P   A   P   AP+ G  P P A P  +  + +S   
Sbjct: 393 PTPVAAPPPAPPPSVFAPSSGVPTPVAAPPPSVFAPSSGV-PTPVAAPPPSVFASSSGVP 451

Query: 450 IPCLDPAKANIP 485
            P   P  A  P
Sbjct: 452 TPVTAPPPAPPP 463


>SB_23364| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 184

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +3

Query: 33  LSILIVIYSCVQGHVTQRNDPNQLHPVHGLYIKPSVDGSTGDLYV 167
           +S+ +++Y+  Q      + PN +HP+    ++P   GS  +L V
Sbjct: 43  ISLRLIVYAFDQ---LPLSTPNIIHPISSFQVRPETGGSDWELLV 84


>SB_24271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
 Frame = +3

Query: 234 ATAASQKHETAFPSPFAASYPHEETVNKKKQAGAP-VQYAYAVPMTTAPNEGTSPYPYAL 410
           A A S       P   + S P E T  +K  A  P VQ  Y     + P   +  +P+A 
Sbjct: 43  ARALSNSPRRGSPQTQSPSPPAEYTGFQK--AFTPYVQSNYPQHFISPPPRYSDMFPFAS 100

Query: 411 PVSAFPSQASESL 449
           P+S   S +SESL
Sbjct: 101 PLSTGSSSSSESL 113


>SB_7214| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 505

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 21/76 (27%), Positives = 28/76 (36%), Gaps = 3/76 (3%)
 Frame = +1

Query: 220 STSYQPQQLHRNTKLHFRAPSLQ--AIXXXXXXXXXXXXEPRSSTHMRCQ*QQH-QMKAP 390
           ST +   +LH     H R PS+Q   I                 TH+R    QH  ++ P
Sbjct: 157 STQHTHIRLHLTQHSHIRLPSIQHSRIRLPSIQHSHIRLPSTQHTHIRLPLTQHTHIRLP 216

Query: 391 HLIHTLYRSVRFRHKH 438
              HT  R    +H H
Sbjct: 217 STQHTHIRLPSTQHSH 232


>SB_58248| Best HMM Match : Pox_A32 (HMM E-Value=0.97)
          Length = 540

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +3

Query: 321 KQAGAPVQYAYAVPMTTAPNEGTSPYPYALPVSAFPSQASESLI--PC 458
           + AG  V+     P  +AP + T P P+ +      ++ SESL   PC
Sbjct: 479 RTAGCDVRQDECEPSPSAPLDDTHPLPFTIRSQGRHNRVSESLCRRPC 526


>SB_49284| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1041

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 23/86 (26%), Positives = 30/86 (34%), Gaps = 1/86 (1%)
 Frame = +3

Query: 168 AATEEDGVKSQWLTDASVNFLPATAASQKHETAFPSPFAASYPHEETVNKKKQAGAPVQY 347
           A T+    +    T    + +PA  AS       P P  A  P        +Q  A V Y
Sbjct: 323 ARTQPQVYREPTRTSTVAHSIPAPVASVPQ----PPPQPAQQPASHPSASSRQDEAKVVY 378

Query: 348 AYAVPMTTAPNEGT-SPYPYALPVSA 422
               P+   PN     P P A P+ A
Sbjct: 379 VPVYPVAQGPNGVIYEPIPNATPIMA 404


>SB_41973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2504

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 16/58 (27%), Positives = 23/58 (39%)
 Frame = +3

Query: 330 GAPVQYAYAVPMTTAPNEGTSPYPYALPVSAFPSQASESLIPCLDPAKANIPQYSPFH 503
           G  +  AY +P   +      PY      S    QA  + +   DP KA  PQ+  F+
Sbjct: 35  GKTLYAAYLLPENASNCRALIPYHVRFVPSGPAPQAPVTALVLYDPPKAAFPQWVTFY 92


>SB_11943| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 591

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
 Frame = +3

Query: 159 LYVAATEEDGVKSQWLTDASVNFLPATAAS-QKHETAFPSPFAASYPHEETVN----KKK 323
           LY A+   D    Q   D  V+ LP  AA+  K      SPF +  P     +    +K 
Sbjct: 332 LYAASVSGDYCNEQDRVDL-VSSLPHQAATYDKPSVVAGSPFGSREPLPALPSPLSPEKT 390

Query: 324 QAGAPVQYAYAVPMTTAP 377
             G+  QY+Y  PM+  P
Sbjct: 391 TEGSANQYSYPAPMSGKP 408


>SB_5602| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 130

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +2

Query: 161 LRCRDRRRWSQIAMVDRCIRQLLTSHSSFTETRNCISEPLRCKLS 295
           LRC+ RR       V  C RQ    H S+   + C++ PL  +L+
Sbjct: 9   LRCQSRRSSDPTKGVG-CSRQQDGGHGSWNPLKECVTTPLPKQLA 52


>SB_20579| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.39)
          Length = 721

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 9/93 (9%)
 Frame = +3

Query: 246 SQKHETAFPSPFAASYPHEETVNKKKQAG------APVQYAYA---VPMTTAPNEGTSPY 398
           S+    A P P       E T+ + + A       AP Q   A   V  +T P   TSP 
Sbjct: 534 SRASSPAAPQPEPTISQSEPTIRQSESAAKDTAPEAPAQPPTAADPVSRSTTPTRPTSPP 593

Query: 399 PYALPVSAFPSQASESLIPCLDPAKANIPQYSP 497
           P +  +S+ P  A +  +  L P   ++   +P
Sbjct: 594 PKSTSISSLPDSAPQVCV-MLQPPLPSLSNKNP 625


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,673,696
Number of Sequences: 59808
Number of extensions: 367052
Number of successful extensions: 1384
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1380
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -