Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12g14
         (503 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     25   0.59 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   1.8  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   1.8  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.6  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.6  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   9.6  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   9.6  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.6  

>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 24.6 bits (51), Expect = 0.59
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 267 FPSPFAASYPHEETVNK 317
           FP  F  SYP EE +N+
Sbjct: 312 FPIKFVPSYPFEEDINE 328


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 229 YQPQQLHRNTKLHFRAPS 282
           +QP  +H+ T + FR P+
Sbjct: 273 FQPVHVHKQTAIAFRTPT 290


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 229 YQPQQLHRNTKLHFRAPS 282
           +QP  +H+ T + FR P+
Sbjct: 273 FQPVHVHKQTAIAFRTPT 290


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +1

Query: 208 PMHPSTSYQPQQLHRNTKLHFRAPS 282
           P HPST    ++     + H RA S
Sbjct: 391 PYHPSTQEDSEEHLTPKRFHSRAAS 415


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +1

Query: 208 PMHPSTSYQPQQLHRNTKLHFRAPS 282
           P HPST    ++     + H RA S
Sbjct: 391 PYHPSTQEDSEEHLTPKRFHSRAAS 415


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -1

Query: 104 ELIRVVSLSHVTLNTRVNHY 45
           E +  V L H+++N    HY
Sbjct: 579 EALEAVRLGHMSINQAAIHY 598


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = +3

Query: 294 PHEETVNKKKQAGAPVQYAYAVP 362
           PH+ET  K +    P+    A P
Sbjct: 186 PHDETAKKPRVLSPPLNNNDATP 208


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 9/34 (26%), Positives = 15/34 (44%)
 Frame = +3

Query: 213 ASVNFLPATAASQKHETAFPSPFAASYPHEETVN 314
           ++  FLP +    +H  +   P   S PH +  N
Sbjct: 307 STAGFLPPSYHPHQHHPSQYHPHRGSSPHHQHGN 340


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,433
Number of Sequences: 438
Number of extensions: 3322
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)