Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12g12
(566 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0834 - 20167554-20167716,20169488-20169598,20169716-201698... 32 0.28
09_06_0108 - 20912236-20912364,20912470-20912601,20912718-209130... 28 4.5
12_01_0545 - 4302369-4302926 28 6.0
10_08_0829 - 20871810-20872011,20873226-20873359,20873480-208773... 28 6.0
12_02_0218 - 15817184-15817480,15817564-15817734,15818241-15818477 27 7.9
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 27 7.9
09_04_0548 - 18469636-18470037,18471164-18472705,18474052-184744... 27 7.9
09_04_0546 - 18460309-18461859,18462593-18463015,18463415-18463540 27 7.9
>04_03_0834 -
20167554-20167716,20169488-20169598,20169716-20169801,
20169901-20170011
Length = 156
Score = 32.3 bits (70), Expect = 0.28
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Frame = +2
Query: 71 HLMIFVFISLLMSGIVCENKYTRSANEKNDDAKVDFRTLEKPFRMNKLNLLWTKAQQRLT 250
H+ F+FI M V Y + +ND A + + ++EKP ++ L+ L ++R
Sbjct: 13 HISYFIFILKQMECNVRAENYICTIEIRNDFAILSYFSIEKPLDLDTLSWLLRHGEERGK 72
Query: 251 EPKLKSLYSDLMLHDKEEI-TYKRFKSDGG 337
+ K++ L++ I +R K GG
Sbjct: 73 HMECKAVAKALLMACNLPIGRRERVKDRGG 102
>09_06_0108 -
20912236-20912364,20912470-20912601,20912718-20913071,
20913161-20913407,20913489-20913565,20913971-20914045,
20914118-20914219,20914329-20914447,20914861-20914984,
20915081-20915131,20915247-20915345,20915839-20915949
Length = 539
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 302 EITYKRFKSDGGDKEGLKEAELRRK 376
E+TYK FK + +KEG+ A++ K
Sbjct: 385 EVTYKPFKEEDMEKEGIDNADVVEK 409
>12_01_0545 - 4302369-4302926
Length = 185
Score = 27.9 bits (59), Expect = 6.0
Identities = 21/77 (27%), Positives = 30/77 (38%)
Frame = +2
Query: 263 KSLYSDLMLHDKEEITYKRFKSDGGDKEGLKEAELRRKLSNIMSVYGLLEHFDPKADRQK 442
+ L +L D + + DGGD +E L V +LEH +
Sbjct: 85 RHLEDELGEDDAAGVVGEERAGDGGDDADAEEEVLAAAALPGEHVAEVLEHVGALQEDGD 144
Query: 443 DHPAFNSAMDDHINRSI 493
DH A A D ++RSI
Sbjct: 145 DHGAEEEAEDGEVDRSI 161
>10_08_0829 - 20871810-20872011,20873226-20873359,20873480-20877313,
20878057-20878177,20878414-20878451,20879096-20879218,
20879308-20879505,20880270-20880356
Length = 1578
Score = 27.9 bits (59), Expect = 6.0
Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
Frame = +2
Query: 125 NKYTRSANEKNDDAKVDFRTLEKPFRMNKLNLLWTKAQQRLTEPKL-KSLYSDLMLHDKE 301
NK ANE N D+ V+ E P +K+ LL T+ + L E KL + M K
Sbjct: 1465 NKQGNDANE-NGDSPVN----EVPELQSKIQLLETRLAEALEENKLYRGQLKSPMPEGKS 1519
Query: 302 EITYKRFKSDGGDKEGLKEAELRRKLSNIMSVYGLLEHFDPKADRQK 442
K K + DK E+EL+ +++V L++ + +A R++
Sbjct: 1520 --ASKDGKENDDDKISQLESELKDMQERLLNV--SLQYAEVEAQREE 1562
>12_02_0218 - 15817184-15817480,15817564-15817734,15818241-15818477
Length = 234
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +2
Query: 158 DDAKVDFRTLEKPFRMNKLNLLWTK 232
D AKV+ RT+ + +RM++LN L T+
Sbjct: 174 DYAKVEVRTVIEAYRMHELNFLTTE 198
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 27.5 bits (58), Expect = 7.9
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Frame = +2
Query: 185 LEKPFRMNKLNLLWTKAQQRLTEPKLKSLYSDLMLHDKEEIT-YK-RFKSDGGDKEGLKE 358
++ P + LN +W Q L+E + Y + K+ T Y ++ SD G KE +
Sbjct: 93 VKTPRGLRSLNSVWA---QHLSEEVRRRFYKNWCKSKKKAFTKYALKYDSDAGKKEIQMQ 149
Query: 359 AELRRKLSNIMSVYGLLEHFDPKADRQK 442
E +K ++I+ V + K +QK
Sbjct: 150 LEKMKKYASIVRVIAHTQIRKMKGLKQK 177
>09_04_0548 -
18469636-18470037,18471164-18472705,18474052-18474474,
18474874-18474999
Length = 830
Score = 27.5 bits (58), Expect = 7.9
Identities = 11/44 (25%), Positives = 21/44 (47%)
Frame = +2
Query: 203 MNKLNLLWTKAQQRLTEPKLKSLYSDLMLHDKEEITYKRFKSDG 334
MNK +W + + +T+ + + Y L +E + K F +G
Sbjct: 263 MNKQKPIWLRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEG 306
>09_04_0546 - 18460309-18461859,18462593-18463015,18463415-18463540
Length = 699
Score = 27.5 bits (58), Expect = 7.9
Identities = 11/44 (25%), Positives = 21/44 (47%)
Frame = +2
Query: 203 MNKLNLLWTKAQQRLTEPKLKSLYSDLMLHDKEEITYKRFKSDG 334
MNK +W + + +T+ + + Y L +E + K F +G
Sbjct: 263 MNKQKPIWLRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEG 306
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,758,570
Number of Sequences: 37544
Number of extensions: 194652
Number of successful extensions: 407
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -