Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12g12
         (566 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22526| Best HMM Match : No HMM Matches (HMM E-Value=.)              77   1e-14
SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.38 
SB_14361| Best HMM Match : Dynactin_p62 (HMM E-Value=0.00091)          31   0.87 
SB_42267| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=5.9e-12)          30   1.5  
SB_48424| Best HMM Match : PSI (HMM E-Value=0.4)                       29   2.0  
SB_4370| Best HMM Match : PSI (HMM E-Value=0.4)                        29   2.0  
SB_33066| Best HMM Match : RF-1 (HMM E-Value=5.9)                      29   2.6  
SB_47240| Best HMM Match : Pkinase_C (HMM E-Value=2.8e-06)             28   6.1  
SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_13773| Best HMM Match : TolA (HMM E-Value=0.042)                    27   8.1  

>SB_22526| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 666

 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 47/126 (37%), Positives = 71/126 (56%), Gaps = 4/126 (3%)
 Frame = +2

Query: 197 FRMNKLNLLWTKAQQR-LTEPKLKSLYSDLMLHDKEEITYKRFKSDGGDKEGLKEAELRR 373
           FR+NKLN++W KAQ   +++ KL++L  +L+ HD++E+ +K  K  GGD +G  E +LR 
Sbjct: 29  FRINKLNMIWKKAQNTVMSDNKLQNLKRELLQHDEKELKWKELKLHGGDIDGKMEMKLRN 88

Query: 374 KLSNIMSVYGLLEHFDPKADRQKDHPAFNSAMDDHINRSI--FKDKKLNMLWSKAEFSG- 544
            L  I+  +GL       AD   +      A D ++ R +  F D++L  LWS A   G 
Sbjct: 89  NLIRILEKHGL----SRIADAVLEGHGTGYATDTNVVRDMNSFGDRRLEQLWSLASDQGK 144

Query: 545 FTAEEL 562
           FT  EL
Sbjct: 145 FTKAEL 150



 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 494 FKDKKLNMLWSKAEFSGFTAEEL 562
           F D ++  LW KA+  GFT +EL
Sbjct: 230 FSDHRVMELWEKAKKKGFTEQEL 252


>SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2839

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = +2

Query: 134  TRSANEKNDDAKVDFRTLEKPFRMNKLNLLWTKAQQRLTEP-KLKSLYSDLMLHDKEEIT 310
            T   ++ ND+A+  F  +++  ++N   L W  A Q  ++P KLKS++ ++   +   I 
Sbjct: 1323 TMDVDDDNDEARTPFVDVDEHHKLNDEELRWESAGQ--SQPSKLKSMFHEMDSEEPATIE 1380

Query: 311  Y 313
            Y
Sbjct: 1381 Y 1381


>SB_14361| Best HMM Match : Dynactin_p62 (HMM E-Value=0.00091)
          Length = 497

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
 Frame = +2

Query: 185 LEKPFRMNKLNLLWTKAQQRLTEPKLKSLYSDLMLHDKEEITYKRFKSDGGDKEGLKEAE 364
           LE+  +MN  +++  +  QRL  P+ +    D+  H    +      S   DKEG     
Sbjct: 211 LERGLKMNVQSVIVPRISQRLANPEFQP--GDIR-HYVPRLRIAGVGSLECDKEGQVTLT 267

Query: 365 LRRKLSNIMSVYGLLEHFDPKADRQ-KDHPAFNSAMD 472
           L   + NI+ V  LL + +  A++Q KD    +SA D
Sbjct: 268 LTNPVENIVKV-SLLPYIENTAEKQSKDSSEEDSAKD 303


>SB_42267| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=5.9e-12)
          Length = 902

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +2

Query: 122 ENKYTRSANEKNDDAKVDFRTLEKP 196
           EN+YT+  N +N++A+ + RTL  P
Sbjct: 355 ENRYTKEKNVENEEAQEEDRTLNSP 379


>SB_48424| Best HMM Match : PSI (HMM E-Value=0.4)
          Length = 175

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +2

Query: 290 HDKEEITYKRFKSDGGDKEGLKEAELRRKLSNIMSVYGLLEHFDPKADRQKDH 448
           HDKEE+  KR + +       ++ E + K  +I   YGLL       +R  D+
Sbjct: 123 HDKEELKMKRKRDEMTALHSQRKTERQAKADDIRKKYGLLPSKSSGYERLDDN 175


>SB_4370| Best HMM Match : PSI (HMM E-Value=0.4)
          Length = 175

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +2

Query: 290 HDKEEITYKRFKSDGGDKEGLKEAELRRKLSNIMSVYGLLEHFDPKADRQKDH 448
           HDKEE+  KR + +       ++ E + K  +I   YGLL       +R  D+
Sbjct: 123 HDKEELKMKRKRDEMTALHSQRKTERQAKADDIRKKYGLLPSKSSGYERLDDN 175


>SB_33066| Best HMM Match : RF-1 (HMM E-Value=5.9)
          Length = 378

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 422 PKADRQKDHPAFNSAMDDHINRSIFKDKKLNMLWSKAE 535
           P A R   HP F++      N+S FK  K+++ W+K +
Sbjct: 174 PSAVRLFQHPDFDNPGSVLANKSFFKADKVDIKWNKKD 211


>SB_47240| Best HMM Match : Pkinase_C (HMM E-Value=2.8e-06)
          Length = 619

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 16/75 (21%), Positives = 35/75 (46%)
 Frame = +2

Query: 251 EPKLKSLYSDLMLHDKEEITYKRFKSDGGDKEGLKEAELRRKLSNIMSVYGLLEHFDPKA 430
           E  L+   S+  L +KE++ +     D   +  ++ AE  +  SN + +   L+H   K 
Sbjct: 103 EQALRKAESERDLLEKEKVLHDSQVKDLQRRLDMERAERNKNDSNTLQMITELKHSSRKV 162

Query: 431 DRQKDHPAFNSAMDD 475
           +  ++  +  + M+D
Sbjct: 163 EEMREQESSRALMED 177


>SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2193

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
 Frame = +2

Query: 137  RSANEKNDDAKVDFRTLEKPFRMNKLNLLWTKAQQRLTEPKLKSLYSDLMLHDKEEITYK 316
            R+A+EK  DA+ +   +E   R  +L       Q R+TE + K   +D  + ++E+  ++
Sbjct: 1767 RTADEKVQDAENERDDMEH--RNKQLRDDVVNFQSRITELEHKKKKADEKIEEQEDEIHE 1824

Query: 317  RF-------KSDGGDKEGLKEAELRRKLSNI 388
                     ++DGGD   L+    R K SN+
Sbjct: 1825 LLDKLGGMSQTDGGDSSDLESQIERLKRSNV 1855


>SB_13773| Best HMM Match : TolA (HMM E-Value=0.042)
          Length = 1558

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = +2

Query: 185  LEKPFRMNKLNLLWTKAQQRLTEPKLKS-LYSDLMLHDKEEITYKRFKSDGGDK 343
            +E  F +  +     K    LT  KLK  L S     DKEE T +R +   GDK
Sbjct: 1395 MEADFSVQSITERLAKKNAFLTRAKLKEYLASARAPGDKEEFTMRRLRELRGDK 1448


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,313,913
Number of Sequences: 59808
Number of extensions: 249001
Number of successful extensions: 590
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)