Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12g12
         (566 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g05200.1 68414.m00524 glutamate receptor family protein (GLR3...    30   0.94 
At5g01380.1 68418.m00051 expressed protein                             29   1.6  
At4g36680.1 68417.m05204 pentatricopeptide (PPR) repeat-containi...    29   2.2  
At4g08310.1 68417.m01372 expressed protein glutamic acid-rich pr...    29   2.2  
At5g01030.2 68418.m00006 expressed protein                             29   2.9  
At5g01030.1 68418.m00005 expressed protein                             29   2.9  
At1g27720.1 68414.m03388 transcription initiation factor IID (TF...    28   3.8  
At5g55840.1 68418.m06958 pentatricopeptide (PPR) repeat-containi...    27   8.7  

>At1g05200.1 68414.m00524 glutamate receptor family protein (GLR3.4)
           plant glutamate receptor family, PMID:11379626
          Length = 959

 Score = 30.3 bits (65), Expect = 0.94
 Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
 Frame = +2

Query: 275 SDLMLHDKEEITYKRFKSDGGDKEGLKEAELRRKLSNIMSVYGLLEHFDPKADRQKDHPA 454
           S L +  KE      F  +           LR++ S++    G L  +D    R    PA
Sbjct: 24  SVLWVVPKECACRSNFSRNSSSSSSSSLRPLRQRPSSVN--VGALFTYDSFIGRAAK-PA 80

Query: 455 FNSAMDD-HINRSIFKDKKLNMLWSKAEFSGF 547
             +AMDD + ++S+ K  KLN+++  +  SGF
Sbjct: 81  VKAAMDDVNADQSVLKGIKLNIIFQDSNCSGF 112


>At5g01380.1 68418.m00051 expressed protein 
          Length = 323

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
 Frame = +2

Query: 338 DKEGLKEAE-LRRKLSNIMSVYGLLEHFDPKADRQKDHPAFNSAMDDHINRSIFKDKKLN 514
           DK  ++ AE  + K  N+++ Y   E  +P A RQ+  P +N        +SIF+ +   
Sbjct: 90  DKGFVRSAEQCKSKWKNLVTRYKACETTEPDAIRQQ-FPFYNEI------QSIFEARMQR 142

Query: 515 MLWSKA 532
           MLWS+A
Sbjct: 143 MLWSEA 148


>At4g36680.1 68417.m05204 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587; contains Pfam profile PF01535: PPR
           repeat; identical to cDNA membrane-associated
           salt-inducible protein like GI:2632060
          Length = 412

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +2

Query: 146 NEKNDDAKVDFRTLEKPFRMNKLNLLWTKAQQRL 247
           N+K DDAK   RT++K F  + LN  W K ++ L
Sbjct: 361 NKKRDDAKGLIRTVKKKFPPSFLN-AWKKLEEEL 393


>At4g08310.1 68417.m01372 expressed protein glutamic acid-rich
           protein precursor - Plasmodium falciparum, PIR2:A54514
          Length = 504

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 24/76 (31%), Positives = 38/76 (50%)
 Frame = +2

Query: 227 TKAQQRLTEPKLKSLYSDLMLHDKEEITYKRFKSDGGDKEGLKEAELRRKLSNIMSVYGL 406
           TKAQ++    K+KS  +     D EE+    F SDG D+E  KE  +++K++    +   
Sbjct: 239 TKAQRKPVSKKVKS--TPAKNSDSEEM----FDSDGEDEEEDKEVAVKKKMAEKRKL--S 290

Query: 407 LEHFDPKADRQKDHPA 454
                 K  R+K+ PA
Sbjct: 291 KSEGTGKRKREKEKPA 306


>At5g01030.2 68418.m00006 expressed protein 
          Length = 744

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +2

Query: 293 DKEEITYKRFKSDGGDKEGLKEAELRRKLSNIMSVYGL 406
           +K+EI    +KS G D +G++  + RR  SN  S  GL
Sbjct: 156 NKQEIATCSYKSSGRDHKGVEPRKSRRTHSNRESTTGL 193


>At5g01030.1 68418.m00005 expressed protein 
          Length = 744

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +2

Query: 293 DKEEITYKRFKSDGGDKEGLKEAELRRKLSNIMSVYGL 406
           +K+EI    +KS G D +G++  + RR  SN  S  GL
Sbjct: 156 NKQEIATCSYKSSGRDHKGVEPRKSRRTHSNRESTTGL 193


>At1g27720.1 68414.m03388 transcription initiation factor IID
           (TFIID) component TAF4 family protein contains Pfam
           profile PF05236: Transcription initiation factor TFIID
           component TAF4 family
          Length = 682

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 21/78 (26%), Positives = 37/78 (47%)
 Frame = +2

Query: 203 MNKLNLLWTKAQQRLTEPKLKSLYSDLMLHDKEEITYKRFKSDGGDKEGLKEAELRRKLS 382
           + K N +   +   L E + + L S    +D+    Y+R      ++  L++  L+RKL+
Sbjct: 435 IEKFNDVTAVSGINLREEEKQLLDSGPKKNDRVSKAYRRLVHGEEERTLLQKIPLQRKLT 494

Query: 383 NIMSVYGLLEHFDPKADR 436
            IM   G L+H D   +R
Sbjct: 495 EIMGKSG-LKHIDHDVER 511


>At5g55840.1 68418.m06958 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587; contains Pfam profile PF01535: PPR
           repeat
          Length = 1274

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 443 DHPAFNSAMDDHINRSIFKDKKLNMLWSKAEFSGFTAEELS 565
           +H  FN+ +D HI+   FK+  L M +   E  G T  E+S
Sbjct: 332 NHVTFNALIDGHISEGNFKE-ALKMFY-MMEAKGLTPSEVS 370


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,206,567
Number of Sequences: 28952
Number of extensions: 179090
Number of successful extensions: 447
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)