Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12g11
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.01 |||glycine decarboxylase complex subunit H|Schizosa...   132   6e-32
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    32   0.070
SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    30   0.37 
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi...    27   2.0  
SPAC26H5.07c |||seven transmembrane receptor-like protein|Schizo...    27   2.6  
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    27   3.5  
SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit |Schi...    26   4.6  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    26   4.6  
SPAC30C2.06c |dml1||mitochondrial genome maintenance protein |Sc...    26   4.6  
SPCC1672.01 |||histidinol-phosphatase |Schizosaccharomyces pombe...    26   6.1  
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    26   6.1  
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    25   8.0  
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M...    25   8.0  
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    25   8.0  

>SPBP19A11.01 |||glycine decarboxylase complex subunit
           H|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 169

 Score =  132 bits (318), Expect = 6e-32
 Identities = 62/153 (40%), Positives = 101/153 (66%), Gaps = 9/153 (5%)
 Frame = +1

Query: 196 LQSNIRQTYCM------LCLKYSTGG--SSRKYTDRHEWVTIDKDIGTVGVSEYAQESLG 351
           L S+++  +C+      L +K+S     S++ +T  HEWV +D D+GTVG++ YA  +LG
Sbjct: 15  LTSSVKTGFCLKAAAPTLSMKWSAVKYYSTKHFTKEHEWVKVDGDVGTVGITSYAANALG 74

Query: 352 DVVFAQLPDPGTDLKAGDECGALESVKAASEIYSPLSGTVTEKNKDVEDKPALINTSCYD 531
           +VVF +LP+P T +  GD  GA+ESVK+AS++YSP+SGTVT  N+ + D P  +++S  +
Sbjct: 75  EVVFVELPEPETTVSVGDGIGAVESVKSASDVYSPVSGTVTSINESLGDSPDKVSSSPEE 134

Query: 532 KGWLFRLKIIKQSEINDLMTEEEYKKFL-ETDA 627
           +GW+ ++K+    E+  L+ +E Y +F  E DA
Sbjct: 135 EGWICKIKLSSPDELKSLLNDESYAQFCKEEDA 167


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 32.3 bits (70), Expect = 0.070
 Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
 Frame = -1

Query: 638 SGFSASVS--KNFLYSSSVMRSFISLCLIIFNLNNHPLS*QDVFISAGLSSTSLFFSVTV 465
           S FS+S++   + + SSS+  +F S+  I+ +  + P S     +S   SSTS  FS   
Sbjct: 551 SDFSSSITTISSGISSSSIPSTFSSVSSILSSSTSSPSS---TSLSISSSSTSSTFSSAS 607

Query: 464 PDNGE*ISLAAFTLSKAPHSSPALRSVPGSGSCAKTTSPRDSWAYSLTPTVPISLSIVTH 285
             +   IS ++ + S    SSP   +     S +   S   S   S   T+PIS S+ T+
Sbjct: 608 TSSPSSIS-SSISSSSTILSSPTPSTSSLMISSSSIISGSSSILSSSISTIPISSSLSTY 666

Query: 284 S 282
           S
Sbjct: 667 S 667



 Score = 30.7 bits (66), Expect = 0.21
 Identities = 37/132 (28%), Positives = 60/132 (45%), Gaps = 5/132 (3%)
 Frame = -1

Query: 650 NLNYSGFSASVSKNFLYSSSVMRSFISLCLIIFNLNNHPLS*QDVFISAGLSSTSLFFSV 471
           +++ S  S++ S     S S + S IS    I +      S   +  S+ +S +S   S 
Sbjct: 593 SISSSSTSSTFSSASTSSPSSISSSISSSSTILSSPTPSTSSLMISSSSIISGSSSILSS 652

Query: 470 TVPDNGE*ISLAAFTLSKAPHSSPALRS-----VPGSGSCAKTTSPRDSWAYSLTPTVPI 306
           ++       SL+ ++ S  P SS  + S     V  S   + ++SP  S + SL  T   
Sbjct: 653 SISTIPISSSLSTYSSSVIPSSSTLVSSSSSLIVSSSPVASSSSSPIPS-SSSLVSTYSA 711

Query: 305 SLSIVTHSCLSV 270
           SLS +THS LS+
Sbjct: 712 SLSNITHSSLSL 723


>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 368

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = -1

Query: 512 ISAGLSSTSLFFSVTVPDNGE*ISLAAFTLSKAPHSSPALRSVPGSGSCAKTTSPRDSW 336
           +S+ L + SL F      N   +S  + +LSK+ +S+ AL S   S  CA T    + W
Sbjct: 310 VSSSLPTLSLDFKQEYSGNNHDMSGLSSSLSKSHNSTSALSSQIWSSPCASTLGGVNVW 368


>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
           Ran1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 470

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = -1

Query: 341 SWAYSLTPTVPISLSIVT-HSCLSV 270
           +W +  TPT+P+SL ++T +S L V
Sbjct: 360 NWNHCATPTIPVSLQVLTPNSSLKV 384


>SPAC26H5.07c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 505

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 660 YLIQLKLFWFLSICFQKFLVLFFSHEIIYL 571
           YL   KL WFL+  +   LVL     I+YL
Sbjct: 394 YLKYWKLLWFLNYGYTDILVLILMLTILYL 423


>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 693 NKDSTFEINSLYLIQLKLFWFLSICFQKFL 604
           +KDS   +NS+  +   + WFL  CF +F+
Sbjct: 795 SKDSDL-VNSVSYLHNSMEWFLQRCFSRFM 823


>SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 115 STKNTDNKMAIQRCLLQIVKTYKLRHHLQSNIRQTY 222
           ST N D    I+     +  +YKL++ L S IR TY
Sbjct: 61  STMNCDVCRLIEPEFKALANSYKLKYGLDSGIRFTY 96


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
           Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = -1

Query: 611 NFLYSSSVMRSFISLCLIIFNLNNHPLS*QDVFISAGLSSTSLF 480
           NF +S  ++  F+  C++++  NN P    +V  +A ++ + LF
Sbjct: 468 NFDFSGYILNEFVKDCVVVYLENNDP----EVRKTASITCSQLF 507


>SPAC30C2.06c |dml1||mitochondrial genome maintenance protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 465

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +1

Query: 403 DECGALESVKAASEIYSPLSGTVTEKNKDVEDK 501
           +EC +++  +AA +I +P  G  +E  K V+D+
Sbjct: 196 EECDSVQGFQAAIDIDTPWGGFASEYMKVVQDE 228


>SPCC1672.01 |||histidinol-phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 306

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +1

Query: 511 INTSCYDKGWLFRLKIIKQSEINDLMTEEEYKKFLETDAEKPE*FKLN 654
           INTS + KGW        Q  + +LM E+  +  L  D+  P    LN
Sbjct: 211 INTSAFRKGW---KTAYPQQRLLELMVEQGAQLTLSDDSHGPHQVGLN 255


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 138 NGNTEMLITNSENLQIKASFTVKHQTNI 221
           N N E+ +T +EN+ IK    +K++ NI
Sbjct: 898 NNNKEVNLTKAENVGIKKRRIMKNENNI 925


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = -1

Query: 623 SVSKNFLYSSSVMRSFISLCLIIFNLNNHPLS 528
           SVS     S+  +RS +S  L   NLNN PLS
Sbjct: 305 SVSTKNSSSNKNLRSSLSKLLSTSNLNNKPLS 336


>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 609

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 10/88 (11%)
 Frame = +1

Query: 241 YSTGGSSRKYTDRHEWVTIDKDIGTVGVSEYAQESLGDVVFAQL-PDPG---TDLKAGDE 408
           Y +  SS + T  H  +    + GTV  +     + GDVV   + P  G   T + +G  
Sbjct: 63  YPSSKSSGRGTTNHSTIYTTINSGTVASTYTVTLADGDVVVKDIEPTAGTVTTTITSGSH 122

Query: 409 ------CGALESVKAASEIYSPLSGTVT 474
                   A  +V    E+  PL+GTVT
Sbjct: 123 EFTTTLAEASGTVPGTVEVVEPLAGTVT 150


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 229 LCLKYSTGGSSRKYTDRHEWVTI 297
           L  KY + G  RK  D+ EW+ I
Sbjct: 265 LLAKYDSDGHVRKLLDKFEWIFI 287


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,052,785
Number of Sequences: 5004
Number of extensions: 68245
Number of successful extensions: 223
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)