Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12g11
(707 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12241| Best HMM Match : GCV_H (HMM E-Value=0) 140 1e-33
SB_57602| Best HMM Match : GCV_H (HMM E-Value=0) 105 4e-23
SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36) 31 0.69
SB_54745| Best HMM Match : ChaB (HMM E-Value=5.6) 30 1.6
SB_28727| Best HMM Match : LISCH7 (HMM E-Value=3.6) 30 1.6
SB_54323| Best HMM Match : LISCH7 (HMM E-Value=3.6) 30 1.6
SB_12743| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_3188| Best HMM Match : Hyd_WA (HMM E-Value=2e-13) 29 3.7
SB_42482| Best HMM Match : 7tm_1 (HMM E-Value=0) 28 6.5
>SB_12241| Best HMM Match : GCV_H (HMM E-Value=0)
Length = 178
Score = 140 bits (339), Expect = 1e-33
Identities = 59/122 (48%), Positives = 88/122 (72%)
Frame = +1
Query: 265 KYTDRHEWVTIDKDIGTVGVSEYAQESLGDVVFAQLPDPGTDLKAGDECGALESVKAASE 444
KYT +HEWV ++ IGT+GV++YAQ +LGD+V+ QLP+ G +E GALESVKAAS+
Sbjct: 56 KYTPKHEWVVVENGIGTIGVTDYAQSNLGDIVYVQLPEVGDKFSMEEEFGALESVKAASD 115
Query: 445 IYSPLSGTVTEKNKDVEDKPALINTSCYDKGWLFRLKIIKQSEINDLMTEEEYKKFLETD 624
+YSP SG +TE N +E+ P+LIN S Y GW+ ++++ SE++DL+ EE YK+ + +
Sbjct: 116 LYSPTSGKITEINSQLEEDPSLINKSPYGDGWIVKMELSNPSELDDLLDEEAYKELVAQE 175
Query: 625 AE 630
+
Sbjct: 176 ED 177
>SB_57602| Best HMM Match : GCV_H (HMM E-Value=0)
Length = 126
Score = 105 bits (252), Expect = 4e-23
Identities = 44/117 (37%), Positives = 73/117 (62%)
Frame = +1
Query: 265 KYTDRHEWVTIDKDIGTVGVSEYAQESLGDVVFAQLPDPGTDLKAGDECGALESVKAASE 444
KYT HEWV+I+ DI TVG++++AQ+ LGD+V+ ++ L + G +E+VK S+
Sbjct: 8 KYTKDHEWVSIEGDIATVGITDFAQKELGDIVYVEVETLDQTLDRDEVFGTVEAVKTVSD 67
Query: 445 IYSPLSGTVTEKNKDVEDKPALINTSCYDKGWLFRLKIIKQSEINDLMTEEEYKKFL 615
++ PLSG + E N +E P +N+ Y GW+ ++KI S+I L++ E+Y +
Sbjct: 68 LFLPLSGEIIEFNDSLETTPETVNSDPYGDGWMVKIKISDNSQIESLLSSEDYSALI 124
>SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36)
Length = 437
Score = 31.5 bits (68), Expect = 0.69
Identities = 27/97 (27%), Positives = 43/97 (44%)
Frame = +1
Query: 349 GDVVFAQLPDPGTDLKAGDECGALESVKAASEIYSPLSGTVTEKNKDVEDKPALINTSCY 528
G + ++LP P + G + G S A Y +SG + + + +DK +
Sbjct: 19 GYIAQSRLPPPKPKI-IGIDLGTTYSCVGA---YQAISGRIDIFSDENDDKVVPSLVAFT 74
Query: 529 DKGWLFRLKIIKQSEINDLMTEEEYKKFLETDAEKPE 639
DKG L K + Q+EIN T + K+F+ K E
Sbjct: 75 DKGVLVGEKALSQAEINPKNTIYDAKRFIGKTFTKQE 111
>SB_54745| Best HMM Match : ChaB (HMM E-Value=5.6)
Length = 420
Score = 30.3 bits (65), Expect = 1.6
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Frame = +1
Query: 283 EWVTIDK-DIGTVGVSEYAQESLGDVVFAQLPDPGTDLK--AGDECGALESVKAASEIYS 453
E V +D+ D+ G++E + D AQLP PGT LK + G V+ S+
Sbjct: 115 EQVYVDEVDVDEEGIAEMLMD---DNSVAQLPRPGTSLKKPGTGQGGPTPGVRPMSQAGR 171
Query: 454 PLSGTV 471
P+SG V
Sbjct: 172 PVSGFV 177
>SB_28727| Best HMM Match : LISCH7 (HMM E-Value=3.6)
Length = 102
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +1
Query: 157 LLQIVKTYKLRHHLQSNIRQTYCMLCLKYS 246
LL V Y+L + L +IR TYC+ CL S
Sbjct: 28 LLLYVPLYRLLYSLMCDIRVTYCVTCLTSS 57
>SB_54323| Best HMM Match : LISCH7 (HMM E-Value=3.6)
Length = 165
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +1
Query: 157 LLQIVKTYKLRHHLQSNIRQTYCMLCLKYS 246
LL V Y+L + L +IR TYC+ CL S
Sbjct: 91 LLLYVPLYRLLYSLMCDIRVTYCVTCLTSS 120
>SB_12743| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 922
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/69 (26%), Positives = 34/69 (49%)
Frame = +1
Query: 445 IYSPLSGTVTEKNKDVEDKPALINTSCYDKGWLFRLKIIKQSEINDLMTEEEYKKFLETD 624
+++ L+GT +K V + P L+ LF++ + D TE+EYK + E+
Sbjct: 182 LHTALNGTKKMSSKTVSESPFLVLALDIPASPLFKVPLSSLLSKFDGTTEKEYKTYKESF 241
Query: 625 AEKPE*FKL 651
++ E +L
Sbjct: 242 IKRYELLRL 250
>SB_3188| Best HMM Match : Hyd_WA (HMM E-Value=2e-13)
Length = 1389
Score = 29.1 bits (62), Expect = 3.7
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = -1
Query: 374 GSCAKTTSPRDSWAYSLTPTVPISLSIVTHSCLSVYFLDDPPVLYFRH 231
GSC +T S +D + T T PI+ + H+ ++V +D PP L H
Sbjct: 511 GSCNQTVSLQDECS---TTTGPITDMLPGHNSVNVDSIDGPPSLDLSH 555
>SB_42482| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 347
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -3
Query: 396 FKVCSGVWQLCKNNITKRFLGIFANPNCTYIFV-YCNPFMSISI 268
F CS +W L + + F+G+F N IFV Y + ++ I
Sbjct: 167 FSTCSLIWDLNRISFVIVFIGVFVNSVTITIFVCYYKIYKTVKI 210
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,863,568
Number of Sequences: 59808
Number of extensions: 474836
Number of successful extensions: 1217
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1208
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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