Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12g11
(707 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g35120.1 68415.m04308 glycine cleavage system H protein, mito... 125 3e-29
At2g35370.1 68415.m04336 glycine cleavage system H protein 1, mi... 120 9e-28
At1g32470.1 68414.m04007 glycine cleavage system H protein, mito... 116 2e-26
At4g01860.2 68417.m00244 transducin family protein / WD-40 repea... 30 1.3
At4g01860.1 68417.m00243 transducin family protein / WD-40 repea... 30 1.3
At2g32900.1 68415.m04033 centromere/kinetochore protein, putativ... 30 1.3
At5g05020.1 68418.m00533 expressed protein 30 1.7
At1g34050.1 68414.m04221 ankyrin repeat family protein contains ... 30 1.7
At2g18120.1 68415.m02109 lateral root primordium (LRP) protein-r... 29 3.0
At1g10870.1 68414.m01249 ARF GTPase-activating domain-containing... 29 3.0
At4g14350.2 68417.m02211 protein kinase family protein contains ... 28 5.3
At4g14350.1 68417.m02210 protein kinase family protein contains ... 28 5.3
At1g60860.1 68414.m06851 ARF GTPase-activating domain-containing... 28 5.3
At3g01880.1 68416.m00133 hypothetical protein 28 7.0
At1g69280.1 68414.m07943 expressed protein 28 7.0
At1g08730.1 68414.m00969 myosin heavy chain (PCR43) identical to... 28 7.0
>At2g35120.1 68415.m04308 glycine cleavage system H protein,
mitochondrial, putative similar to SP|Q39732 Glycine
cleavage system H protein, mitochondrial precursor
{Flaveria anomala}; contains Pfam profile PF01597:
Glycine cleavage H-protein
Length = 156
Score = 125 bits (301), Expect = 3e-29
Identities = 54/123 (43%), Positives = 82/123 (66%)
Frame = +1
Query: 265 KYTDRHEWVTIDKDIGTVGVSEYAQESLGDVVFAQLPDPGTDLKAGDECGALESVKAASE 444
KY D HEWV ID + T G++++AQ+ LGDVV+ +LPD G + G GA+ESVKA S+
Sbjct: 33 KYADSHEWVKIDGNKATFGITDHAQDHLGDVVYVELPDVGHSVSQGKSFGAVESVKATSD 92
Query: 445 IYSPLSGTVTEKNKDVEDKPALINTSCYDKGWLFRLKIIKQSEINDLMTEEEYKKFLETD 624
I SP+SG V E N+++ + P L+N+S Y++GW+ ++++ E LM ++Y KF E +
Sbjct: 93 INSPVSGKVVEVNEELTESPGLVNSSPYEQGWIIKVELSDAGEAEKLMDSDKYSKFCEEE 152
Query: 625 AEK 633
K
Sbjct: 153 DAK 155
>At2g35370.1 68415.m04336 glycine cleavage system H protein 1,
mitochondrial (GDCSH) (GCDH) identical to SP|P25855
Glycine cleavage system H protein 1, mitochondrial
precursor {Arabidopsis thaliana}
Length = 165
Score = 120 bits (289), Expect = 9e-28
Identities = 54/128 (42%), Positives = 81/128 (63%)
Frame = +1
Query: 241 YSTGGSSRKYTDRHEWVTIDKDIGTVGVSEYAQESLGDVVFAQLPDPGTDLKAGDECGAL 420
+ST KY + HEWV + + T+G++ +AQ+ LG+VVF +LP+ T + GA+
Sbjct: 34 FSTVLEGLKYANSHEWVKHEGSVATIGITAHAQDHLGEVVFVELPEDNTSVSKEKSFGAV 93
Query: 421 ESVKAASEIYSPLSGTVTEKNKDVEDKPALINTSCYDKGWLFRLKIIKQSEINDLMTEEE 600
ESVKA SEI SP+SG + E NK + + P LIN+S Y+ GW+ ++K +E+ LM +E
Sbjct: 94 ESVKATSEILSPISGEIIEVNKKLTESPGLINSSPYEDGWMIKVKPSSPAELESLMGPKE 153
Query: 601 YKKFLETD 624
Y KF E +
Sbjct: 154 YTKFCEEE 161
>At1g32470.1 68414.m04007 glycine cleavage system H protein,
mitochondrial, putative similar to SP|P25855 Glycine
cleavage system H protein 1, mitochondrial precursor
{Arabidopsis thaliana}; contains Pfam profile PF01597:
Glycine cleavage H-protein
Length = 166
Score = 116 bits (278), Expect = 2e-26
Identities = 51/120 (42%), Positives = 78/120 (65%)
Frame = +1
Query: 265 KYTDRHEWVTIDKDIGTVGVSEYAQESLGDVVFAQLPDPGTDLKAGDECGALESVKAASE 444
KY + HEWV + + T+G++++AQ+ LG+VVF +LP+ + + GA+ESVKA SE
Sbjct: 43 KYANSHEWVKHEGSVATIGITDHAQDHLGEVVFVELPEANSSVSKEKSFGAVESVKATSE 102
Query: 445 IYSPLSGTVTEKNKDVEDKPALINTSCYDKGWLFRLKIIKQSEINDLMTEEEYKKFLETD 624
I SP+SG V E N + + P LIN+S Y+ GW+ ++K +E+ LM +EY KF E +
Sbjct: 103 ILSPISGEVIEVNTKLTESPGLINSSPYEDGWMIKVKPSSPAELEALMGPKEYTKFCEEE 162
>At4g01860.2 68417.m00244 transducin family protein / WD-40 repeat
family protein contains ten G-protein beta-subunit
(beta-transducin) WD-40 repeats
Length = 1308
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Frame = +1
Query: 163 QIVKTYKLRHHLQSNIRQTY--CMLCLKYSTGGSSR--KYTDRHEWVTIDKDIGTVGVSE 330
Q K + L H Q + R+ + C + G S K +DR W+ + G+V +S
Sbjct: 739 QKTKVFPLNLHTQFHGRELHSLCFISTDTKAGFDSEESKISDRSSWIATGCEDGSVRLSR 798
Query: 331 YAQE 342
YA E
Sbjct: 799 YASE 802
>At4g01860.1 68417.m00243 transducin family protein / WD-40 repeat
family protein contains ten G-protein beta-subunit
(beta-transducin) WD-40 repeats
Length = 1308
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Frame = +1
Query: 163 QIVKTYKLRHHLQSNIRQTY--CMLCLKYSTGGSSR--KYTDRHEWVTIDKDIGTVGVSE 330
Q K + L H Q + R+ + C + G S K +DR W+ + G+V +S
Sbjct: 739 QKTKVFPLNLHTQFHGRELHSLCFISTDTKAGFDSEESKISDRSSWIATGCEDGSVRLSR 798
Query: 331 YAQE 342
YA E
Sbjct: 799 YASE 802
>At2g32900.1 68415.m04033 centromere/kinetochore protein, putative
(ZW10) identical to centromere/kinetochore protein zw10
homolog SP:O48626 from [Arabidopsis thaliana]
Length = 742
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Frame = +1
Query: 418 LESVKAASEIYSPLSGTV-----TEKNKDVEDKPALINTSCYDKGWLFRLKIIKQSEIND 582
L+SV++A E PL + T K ++ D P + TS ++ G LFR + +E+ D
Sbjct: 660 LDSVRSADETSRPLDDIIPSLRKTRKLAELLDMPLMSITSAWESGELFRCNFTR-TEVQD 718
Query: 583 LM 588
+
Sbjct: 719 FI 720
>At5g05020.1 68418.m00533 expressed protein
Length = 154
Score = 29.9 bits (64), Expect = 1.7
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Frame = -1
Query: 566 CLIIFNLNNHPLS*QDVFISAGLSSTSLFFSVTVPDNGE*ISLAAF-TLSKAPHSSPALR 390
C I + N P+S V++ S+T++ +VT PD + L+A T+ +P S L
Sbjct: 49 CNISGDPNAPPVSGAPVYLKCDGSNTTIADAVTKPDGTFRVLLSAVQTVLISPSSCYLLA 108
Query: 389 SVPGSGSCA 363
++PG G+C+
Sbjct: 109 NLPG-GNCS 116
>At1g34050.1 68414.m04221 ankyrin repeat family protein contains
ankyrin repeat domains, Pfam:PF00023
Length = 573
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Frame = -2
Query: 241 TSGITYSMFV*CLTVNDALICKFSLFVISISVLPFY---CQYFL*ITNRILW 95
T+G T + V ++ N AL + ++ +S++P+ + FL +T+RILW
Sbjct: 432 TAGRTLAFQVFSISNNIALFTSLCIVILLVSIIPYRTRPLKNFLKLTHRILW 483
>At2g18120.1 68415.m02109 lateral root primordium (LRP)
protein-related similar to lateral root primordium 1
(LRP1) [Arabidopsis thaliana] GI:882341; contains Pfam
profile PF05142: Domain of unknown function (DUF702)
Length = 222
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +1
Query: 247 TGGSSR--KYTDRHEWVTIDKDIGTVGVSEYAQESLGDVVFAQLPDPGTD 390
TGGS R KY D ++ T+D +G + + E D +F + GTD
Sbjct: 128 TGGSGRVGKYRDINQHATLDSSGLEMGETRFPDEVSSDALFRCVRMSGTD 177
>At1g10870.1 68414.m01249 ARF GTPase-activating domain-containing
protein
Length = 775
Score = 29.1 bits (62), Expect = 3.0
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 404 SPALRSVPGSGSCAKTTSPRDSWA 333
S LR +PG+ +CA+ +P WA
Sbjct: 470 STILRGLPGNNACAECNAPEPDWA 493
>At4g14350.2 68417.m02211 protein kinase family protein contains
similarity to Swiss-Prot:O13310 serine/threonine-protein
kinase orb6 [Schizosaccharomyces pombe]
Length = 551
Score = 28.3 bits (60), Expect = 5.3
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +1
Query: 535 GWLFRLKIIKQSEINDLMTEEEYKKFLETDAEKPE 639
G L+++K ++ND + + ++KF ETD + P+
Sbjct: 424 GKLYQMKAAFIPQVNDELDTQNFEKFEETDKQVPK 458
>At4g14350.1 68417.m02210 protein kinase family protein contains
similarity to Swiss-Prot:O13310 serine/threonine-protein
kinase orb6 [Schizosaccharomyces pombe]
Length = 551
Score = 28.3 bits (60), Expect = 5.3
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +1
Query: 535 GWLFRLKIIKQSEINDLMTEEEYKKFLETDAEKPE 639
G L+++K ++ND + + ++KF ETD + P+
Sbjct: 424 GKLYQMKAAFIPQVNDELDTQNFEKFEETDKQVPK 458
>At1g60860.1 68414.m06851 ARF GTPase-activating domain-containing
protein
Length = 776
Score = 28.3 bits (60), Expect = 5.3
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -1
Query: 395 LRSVPGSGSCAKTTSPRDSWA 333
LR +PG+ +CA+ +P WA
Sbjct: 473 LREIPGNNTCAECNAPDPDWA 493
>At3g01880.1 68416.m00133 hypothetical protein
Length = 592
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -1
Query: 137 LLSVFFVDHKSNTLVSKCNLEF 72
L V+F +H TLV C+LEF
Sbjct: 440 LWRVYFSEHSGGTLVDACDLEF 461
>At1g69280.1 68414.m07943 expressed protein
Length = 400
Score = 27.9 bits (59), Expect = 7.0
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Frame = +1
Query: 274 DRHEWVTIDKDIGTVGVSEYAQESLGDVVFAQLP-DPGTDLKAGDECGALESVKAASEIY 450
+R+ T++K++ T+ S+GD A+ D K+G+ + E + I+
Sbjct: 157 ERNSLPTLEKNLSTLSNDSLFSLSIGDNTIARDELFSYRDFKSGEITKSGELLSFCPAIH 216
Query: 451 SPLSGTVTEKNKDVEDKPALINTSCYDK 534
P + K+ D+EDK + C DK
Sbjct: 217 GPADSSDLGKSFDMEDK---ASGECEDK 241
>At1g08730.1 68414.m00969 myosin heavy chain (PCR43) identical to
myosin heavy chain PCR43 (PIR:T00727) [Arabidopsis
thaliana]; similar to ESTs gb|R30087 and gb|AA394762
Length = 1538
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +1
Query: 271 TDRHEWVTIDKDIGTVGVSEYAQESLGDVVFAQLPDPGTDLKAGDE 408
+D H+++ + + VG+SE QE++ VV A L D G E
Sbjct: 302 SDAHDYLATRRAMDIVGISEKEQEAIFRVVAAILHIGNIDFTKGKE 347
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,308,740
Number of Sequences: 28952
Number of extensions: 331870
Number of successful extensions: 878
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -