Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12g10
         (540 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0129 + 17520753-17520842,17521651-17521741,17521887-175220...   139   1e-33
11_01_0645 + 5185341-5185568,5185773-5185823                           27   7.2  
01_06_1208 + 35424241-35424370,35424415-35424728,35424782-354249...    27   9.6  

>03_04_0129 +
           17520753-17520842,17521651-17521741,17521887-17522070,
           17522149-17522224
          Length = 146

 Score =  139 bits (337), Expect = 1e-33
 Identities = 59/105 (56%), Positives = 81/105 (77%)
 Frame = +3

Query: 129 VPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTP 308
           +PE +D+VKTARFKEL PYDPDW+Y R A+I R IY+R  +GV    KI+GGR+RNG  P
Sbjct: 33  LPEWVDIVKTARFKELPPYDPDWYYTRAASIARKIYLRQGIGVGGFQKIYGGRQRNGSRP 92

Query: 309 SHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 443
            HFC+SSG+I+R  LQ L+ + +++    GGR++T+QGRRDLD++
Sbjct: 93  PHFCKSSGAISRNILQQLQKMGIIDVDPKGGRLITSQGRRDLDQV 137



 Score = 29.9 bits (64), Expect = 1.4
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +2

Query: 53  TVKDVEQDKIVKTVAAHLKKNGQSQ 127
           TVKDV   + VK  +AHLK++G+ +
Sbjct: 8   TVKDVNPHEFVKAYSAHLKRSGKME 32


>11_01_0645 + 5185341-5185568,5185773-5185823
          Length = 92

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +3

Query: 231 IYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARK 347
           ++ +SP  +  +   + GR+R G  P    R +G IA +
Sbjct: 18  VHCKSPAALLGIESPYSGRRRVGARPRGGSRQAGQIAER 56


>01_06_1208 +
           35424241-35424370,35424415-35424728,35424782-35424967,
           35425361-35425523,35425601-35425787,35425875-35426016
          Length = 373

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 399 HRPELSQQASMPPTIAKPCVQYCLMTCRN 313
           H  +  +  + P TIA+  +QYCL TC N
Sbjct: 116 HPTQDPEATNSPFTIAQLQLQYCLHTCTN 144


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,824,037
Number of Sequences: 37544
Number of extensions: 272150
Number of successful extensions: 704
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)