Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12g10
         (540 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical pr...   128   3e-30
AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal pro...   128   3e-30
AF047657-12|AAK18941.3|  367|Caenorhabditis elegans Serpentine r...    27   6.5  
Z83217-2|CAB05680.2|  319|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical
           protein T05F1.3 protein.
          Length = 146

 Score =  128 bits (308), Expect = 3e-30
 Identities = 62/106 (58%), Positives = 75/106 (70%), Gaps = 1/106 (0%)
 Frame = +3

Query: 129 VPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTP 308
           VPE  DLVK    KELAP DPDWFY R A++ RH+Y R P G+    K++GG KR GV P
Sbjct: 31  VPEWSDLVKLGVNKELAPVDPDWFYTRAASLARHLYFR-PAGIGAFKKVYGGNKRRGVAP 89

Query: 309 SHFCRSSGSIARKALQSLEALKLVEKVQDG-GRILTTQGRRDLDRI 443
           +HF  S+G+  RKA+Q LE +K VEK  DG GRIL+ QGR+DLDRI
Sbjct: 90  NHFQTSAGNCLRKAVQQLEKIKWVEKHPDGKGRILSKQGRKDLDRI 135



 Score = 29.5 bits (63), Expect = 1.6
 Identities = 11/26 (42%), Positives = 20/26 (76%)
 Frame = +2

Query: 44  RSVTVKDVEQDKIVKTVAAHLKKNGQ 121
           R+ ++KDV+Q +  K++A  LKK+G+
Sbjct: 3   RATSIKDVDQHEATKSIAHFLKKSGK 28


>AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal
           protein S19 protein.
          Length = 146

 Score =  128 bits (308), Expect = 3e-30
 Identities = 62/106 (58%), Positives = 75/106 (70%), Gaps = 1/106 (0%)
 Frame = +3

Query: 129 VPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTP 308
           VPE  DLVK    KELAP DPDWFY R A++ RH+Y R P G+    K++GG KR GV P
Sbjct: 31  VPEWSDLVKLGVNKELAPVDPDWFYTRAASLARHLYFR-PAGIGAFKKVYGGNKRRGVAP 89

Query: 309 SHFCRSSGSIARKALQSLEALKLVEKVQDG-GRILTTQGRRDLDRI 443
           +HF  S+G+  RKA+Q LE +K VEK  DG GRIL+ QGR+DLDRI
Sbjct: 90  NHFQTSAGNCLRKAVQQLEKIKWVEKHPDGKGRILSKQGRKDLDRI 135



 Score = 29.5 bits (63), Expect = 1.6
 Identities = 11/26 (42%), Positives = 20/26 (76%)
 Frame = +2

Query: 44  RSVTVKDVEQDKIVKTVAAHLKKNGQ 121
           R+ ++KDV+Q +  K++A  LKK+G+
Sbjct: 3   RATSIKDVDQHEATKSIAHFLKKSGK 28


>AF047657-12|AAK18941.3|  367|Caenorhabditis elegans Serpentine
           receptor, class w protein4 protein.
          Length = 367

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = -2

Query: 215 STTHIEPIRVIRSQLFEASCLYKIHVLRYLDFARFFLSEQRQF*QSCLV 69
           S  H+    V R  +   SC    H L +L F+ F++ E R+  Q C +
Sbjct: 54  SRKHLRTNSVYRLMIGICSCDIISHTLTFLAFSPFWIREVRKKNQECFL 102


>Z83217-2|CAB05680.2|  319|Caenorhabditis elegans Hypothetical
           protein C10C6.3 protein.
          Length = 319

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 20/58 (34%), Positives = 27/58 (46%)
 Frame = +3

Query: 237 IRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRIL 410
           I S +  K  T ++ G  R G  P      SGS  +K   +  A+K  EK +D GR L
Sbjct: 141 IESDLKEKPDTNVYTG-SREGYVPPPAKEGSGSGGKKKDMNNVAVKPDEKKKDSGRKL 197


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,705,959
Number of Sequences: 27780
Number of extensions: 234706
Number of successful extensions: 571
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)