Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12g10
         (540 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g15520.1 68418.m01817 40S ribosomal protein S19 (RPS19B) 40S ...   130   6e-31
At3g02080.1 68416.m00173 40S ribosomal protein S19 (RPS19A) simi...   129   1e-30
At5g61170.1 68418.m07674 40S ribosomal protein S19 (RPS19C) 40S ...   126   1e-29
At4g16095.1 68417.m02440 disease resistance protein-related cont...    29   1.5  
At5g45610.1 68418.m05605 expressed protein                             29   2.6  
At1g14300.1 68414.m01695 expressed protein contains Pfam PF04063...    29   2.6  
At3g24000.1 68416.m03014 pentatricopeptide (PPR) repeat-containi...    27   8.0  
At2g02480.1 68415.m00187 DNA polymerase-related weak similarity ...    27   8.0  

>At5g15520.1 68418.m01817 40S ribosomal protein S19 (RPS19B) 40S
           RIBOSOMAL PROTEIN S19 - Oryza sativa,
           SWISSPROT:RS19_ORYSA
          Length = 143

 Score =  130 bits (314), Expect = 6e-31
 Identities = 57/105 (54%), Positives = 75/105 (71%)
 Frame = +3

Query: 129 VPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTP 308
           +P   D+VKT R KELAPYDPDW+Y+R A++ R IY+R  +GV    +I+GG KRNG  P
Sbjct: 31  LPLWTDIVKTGRLKELAPYDPDWYYIRAASMARKIYLRGGLGVGAFRRIYGGSKRNGSRP 90

Query: 309 SHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 443
            HFC+SSG IAR  LQ LE + +VE    GGR +T+ G+RDLD++
Sbjct: 91  PHFCKSSGGIARHILQQLETMSIVELDTKGGRRITSSGQRDLDQV 135



 Score = 28.7 bits (61), Expect = 2.6
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 53  TVKDVEQDKIVKTVAAHLKKNGQ 121
           TVKDV     VK  A+HLK++G+
Sbjct: 6   TVKDVSPHDFVKAYASHLKRSGK 28


>At3g02080.1 68416.m00173 40S ribosomal protein S19 (RPS19A) similar
           to 40S ribosomal protein S19 GB:P40978 [Oryza sativa]
          Length = 143

 Score =  129 bits (312), Expect = 1e-30
 Identities = 55/105 (52%), Positives = 75/105 (71%)
 Frame = +3

Query: 129 VPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTP 308
           +P   D+VKT + KELAPYDPDW+Y+R A++ R +Y+R  +GV    +I+GG KRNG  P
Sbjct: 31  LPTWTDIVKTGKLKELAPYDPDWYYIRAASMARKVYLRGGLGVGAFRRIYGGSKRNGSRP 90

Query: 309 SHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 443
            HFC+SSG IAR  LQ LE + +VE    GGR +T+ G+RDLD++
Sbjct: 91  PHFCKSSGGIARHILQQLETMNIVELDTKGGRRITSSGQRDLDQV 135



 Score = 28.7 bits (61), Expect = 2.6
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 53  TVKDVEQDKIVKTVAAHLKKNGQ 121
           TVKDV     VK  A+HLK++G+
Sbjct: 6   TVKDVSPHDFVKAYASHLKRSGK 28


>At5g61170.1 68418.m07674 40S ribosomal protein S19 (RPS19C) 40S
           ribsomal protein S19, Oryza sativa, SWISSPROT:RS19_ORYSA
          Length = 143

 Score =  126 bits (303), Expect = 1e-29
 Identities = 52/105 (49%), Positives = 75/105 (71%)
 Frame = +3

Query: 129 VPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTP 308
           +P   D+VKT + KELAPYDPDW+Y+R A++ R +Y+R  +GV    +I+GG KRNG  P
Sbjct: 31  LPLWTDIVKTGKLKELAPYDPDWYYIRAASMARKVYLRGGLGVGAFRRIYGGSKRNGSRP 90

Query: 309 SHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 443
            HFC+SSG +AR  LQ L+ + +V+    GGR +T+ G+RDLD++
Sbjct: 91  PHFCKSSGGVARHILQQLQTMNIVDLDTKGGRKITSSGQRDLDQV 135



 Score = 30.7 bits (66), Expect = 0.65
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +2

Query: 53  TVKDVEQDKIVKTVAAHLKKNGQ 121
           TVKDV   + VK  AAHLK++G+
Sbjct: 6   TVKDVSPHEFVKAYAAHLKRSGK 28


>At4g16095.1 68417.m02440 disease resistance protein-related
           contains weak similarity to rpp8 [Arabidopsis thaliana]
           gi|3901294|gb|AAC78631
          Length = 187

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 399 HRPELSQQASMPPTIAKPCVQYCLM 325
           H P L  Q   PP +   C++YC M
Sbjct: 86  HMPRLPDQHRFPPNLTNICLRYCCM 110


>At5g45610.1 68418.m05605 expressed protein
          Length = 633

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +2

Query: 26  PTQGKMRSVTVKDVEQDKIVKTVAAHLKKNGQSQGT*AHGSCKDSSLQRAGSV 184
           PT    R  + KD+E D++ +   + LKK G+S+ T +   C D +  +  +V
Sbjct: 115 PTTSNRRCDSEKDLEIDRLKEQECSQLKK-GKSKETESRNLCADDNRGQCSTV 166


>At1g14300.1 68414.m01695 expressed protein contains Pfam PF04063:
           Domain of unknown function (DUF383) and  PF04064: Domain
           of unknown function (DUF384)
          Length = 339

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +3

Query: 315 FCRSSGSIARKALQSLEALKL-VEKVQDGGRILTTQGRRDLDRI 443
           FCRSSG  A    + + ++ + + K +DG ++L    RR L +I
Sbjct: 143 FCRSSGETADDQFEHVGSILVNISKTEDGRKLLLEPKRRLLKQI 186


>At3g24000.1 68416.m03014 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 633

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +3

Query: 252 GVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVE--KVQDGGRILTTQGR 425
           G +   ++F G  R+G  PSHF  +S   A  +   LE  K V    ++ G +++   G 
Sbjct: 242 GTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGN 301

Query: 426 RDLD 437
             LD
Sbjct: 302 TLLD 305


>At2g02480.1 68415.m00187 DNA polymerase-related weak similarity to
           DNA polymerase III holoenzyme tau subunit [Thermus
           thermophilus] GI:2583049
          Length = 1218

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = -3

Query: 439 LSRSRLPCVVRMRXXXXXXXXXFNASNDCKALRAILPDDLQKCEGVTPLRLR 284
           +S SRL C+ + +          NA +D         +DL+K  G +PL L+
Sbjct: 178 ISSSRLDCLSKYQPRDDIVARNCNAGSDDTEEELSNSEDLRKVTGASPLLLK 229


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,972,499
Number of Sequences: 28952
Number of extensions: 213929
Number of successful extensions: 475
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)