Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12g09
         (540 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q54CM2 Cluster: Putative uncharacterized protein; n=1; ...    33   3.2  
UniRef50_O90758 Cluster: Soluble NSF attachment protein homolog ...    32   9.7  

>UniRef50_Q54CM2 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 1189

 Score = 33.5 bits (73), Expect = 3.2
 Identities = 18/52 (34%), Positives = 31/52 (59%)
 Frame = -2

Query: 227 VLLILFEI*LNVFVENALPIACIGENLHNYSSLNSFFYAREHHL*VHKIYED 72
           +LLIL  + L+V+++++ P+  IG  +  + SL SFF    +   +HK Y D
Sbjct: 705 ILLILTYLELSVWLDSSCPLFGIGNGMCFFISLLSFFSLDINETSMHKYYRD 756


>UniRef50_O90758 Cluster: Soluble NSF attachment protein homolog
           FPV033; n=2; Fowlpox virus|Rep: Soluble NSF attachment
           protein homolog FPV033 - Fowlpox virus (FPV)
          Length = 287

 Score = 31.9 bits (69), Expect = 9.7
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -2

Query: 170 IACIGENLHNYSSLNSFFYAREHHL*VHKIYEDC 69
           I C+ + +  Y S+N+F  A +H + V +IYE C
Sbjct: 98  IECLLQAIEVYKSINNFTTAAKHQMTVAEIYESC 131


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 375,130,274
Number of Sequences: 1657284
Number of extensions: 5406768
Number of successful extensions: 12588
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 12285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12583
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 34572633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)