Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12g09
         (540 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    29   0.58 
SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb...    28   1.0  
SPBC20F10.04c |nse4|rad62|Smc5-6 complex non-SMC subunit Nse4|Sc...    25   5.4  
SPAC8F11.10c |pvg1|SPACUNK4.18|pyruvyltransferase |Schizosacchar...    25   9.5  
SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   9.5  

>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 28.7 bits (61), Expect = 0.58
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = -2

Query: 299 LLYYLYRYNFLVSVLF-YNKIICKRVLLILFEI*LNVFVENALPIACIGENLHNYSSLNS 123
           L Y LY  N L   L  Y  +   +   IL++     FVEN + +  +  +  N S L  
Sbjct: 801 LCYQLYEDNELTDALNNYLDLFGIKFAFILYDY----FVENGMALELLNSDRFNKSYLKQ 856

Query: 122 FFYAREHH 99
           FF +R+++
Sbjct: 857 FFKSRDYN 864


>SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -2

Query: 161 IGENLHNYSSLNSFFYARE 105
           I E LH++S L+SFFYA +
Sbjct: 45  INEMLHSHSELSSFFYAEK 63


>SPBC20F10.04c |nse4|rad62|Smc5-6 complex non-SMC subunit
           Nse4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 300

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -2

Query: 527 KAPSXDVK*TIISSENITTARESTLRGILLLGILSWFH 414
           KAP+   + T+++  NITT   +T + +L +  L   H
Sbjct: 156 KAPNVLTQPTMLNERNITTQENNTTKNVLHISRLLQAH 193


>SPAC8F11.10c |pvg1|SPACUNK4.18|pyruvyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 401

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 432 PQKQYSPKSTLSCSSNIFTTYYSLFY 509
           P+   S +ST++  SN+  TYY  ++
Sbjct: 62  PRNSASCESTITLQSNLLFTYYKHYF 87


>SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -2

Query: 308 ISVLLYYLYRYNFLVSVLFYNKIICKRVLLILF-EI*LNVFVENALPI 168
           +S+L YY   Y+  +SVL   K+  + V + +F +   N+F+ ++  I
Sbjct: 33  LSILPYYKNSYSDFISVLQMYKVHIRMVSIYIFLKALSNIFLASSCEI 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,678,077
Number of Sequences: 5004
Number of extensions: 25637
Number of successful extensions: 67
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)