Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12g09
         (540 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038623-2|AAB94158.1|  342|Caenorhabditis elegans Seven tm rece...    27   6.5  
U41263-6|AAC24432.1|  338|Caenorhabditis elegans Serpentine rece...    27   8.6  
M77697-8|ABB88245.1|  308|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>AF038623-2|AAB94158.1|  342|Caenorhabditis elegans Seven tm
           receptor protein 166 protein.
          Length = 342

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 446 ILLLGILSWFHLLWFY 399
           I + G ++WFHL WFY
Sbjct: 138 IPIAGGINWFHLSWFY 153


>U41263-6|AAC24432.1|  338|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 26 protein.
          Length = 338

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +3

Query: 18  LVDAHSIFLFFRTFRLLAVFINFMNLEVVFASIKK*I*TRIIMEVFADAGYRKSVFDEN 194
           ++  +  +L  +T     +F N     ++F SI   +    +MEV     YR  VFDE+
Sbjct: 39  IISYYFFYLVVKTLIKNNIFSNCTRALLIFCSINSIVHQTTMMEVRIRQIYRSIVFDED 97


>M77697-8|ABB88245.1|  308|Caenorhabditis elegans Hypothetical
           protein B0303.16 protein.
          Length = 308

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -2

Query: 308 ISVLLYYLYRYNFLVSVLFYNKIICK 231
           IS++L++L  Y    S +FY KI+C+
Sbjct: 109 ISIILFFLAFYLTHASSMFYIKILCR 134


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,061,486
Number of Sequences: 27780
Number of extensions: 139063
Number of successful extensions: 329
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)