Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12g09
         (540 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    24   1.1  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        24   1.1  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   1.5  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   4.6  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   6.1  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 491 SSENITTARESTLRGILLLGILSWFHLLW 405
           SSEN  T+ E  L  + L+ I  WF + W
Sbjct: 264 SSENQNTSAECKLAKVALMTISLWF-MAW 291


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 491 SSENITTARESTLRGILLLGILSWFHLLW 405
           SSEN  T+ E  L  + L+ I  WF + W
Sbjct: 14  SSENQNTSAECKLAKVALMTISLWF-MAW 41


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 161 IGENLHNYSSLNSFFYARE 105
           +GENLHN+ S    F   E
Sbjct: 355 VGENLHNHQSFGMDFSLNE 373


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +1

Query: 424 DSIPKSNIPLRVLSRAVVIFSLLIIVYFTSNDGAFKI 534
           +  P+S    RVL      F+++I+  +T+N  AF +
Sbjct: 628 EGTPRS-FSARVLGMVWAGFAMIIVASYTANLAAFLV 663


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 118 FMLANTTSKFIKFMKTAKSLKVRKNKNMLC 29
           F L+   +KF K  K AK+L +     ++C
Sbjct: 318 FSLSRKLAKFAKEKKAAKTLGIVMGVFIIC 347


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,943
Number of Sequences: 438
Number of extensions: 1959
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)