Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12g06
         (579 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic hor...    23   1.4  
DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic hor...    23   1.4  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   5.7  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     21   7.6  

>EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 421 TGRLILKATTTSEHVSLIPNLNG 353
           TGR +     T +H S IP  NG
Sbjct: 341 TGRKVSPRVNTIKHTSCIPTPNG 363


>DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 421 TGRLILKATTTSEHVSLIPNLNG 353
           TGR +     T +H S IP  NG
Sbjct: 341 TGRKVSPRVNTIKHTSCIPTPNG 363


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 8/29 (27%), Positives = 13/29 (44%)
 Frame = -2

Query: 431 TRMHRTSYP*GHDDFRTCFINSKFERVSC 345
           +R H    P G D    C  ++K+  + C
Sbjct: 760 SRFHPFLIPTGFDSCTVCTCDAKYLEIKC 788


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +1

Query: 301 RDLPERTHGPVTHAPQLTRS 360
           RDL  R   P  H+P L  S
Sbjct: 198 RDLSPRNGSPTDHSPVLNLS 217


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,745
Number of Sequences: 336
Number of extensions: 1709
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14412858
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)