Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12g06
         (579 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51104| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   5e-05
SB_46301| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   8e-04
SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38)                    29   3.6  
SB_28853| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_58276| Best HMM Match : MIB_HERC2 (HMM E-Value=8.3e-33)             27   8.4  
SB_49200| Best HMM Match : GatB (HMM E-Value=6.4)                      27   8.4  

>SB_51104| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 326

 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 26/59 (44%), Positives = 27/59 (45%)
 Frame = +2

Query: 2   LGGNYSDNSTSAFALFKFTQSLAAAACFFYXXXXXXXXXXXXXXXXXXXGTACFCRVEW 178
           LG  Y D+S  AFALFKF QS AAA  FFY                   GT  F  VEW
Sbjct: 256 LGFAYPDDSAPAFALFKFVQSGAAAIAFFYSLKLLLEWQLLILVIWSLLGTKGFFLVEW 314


>SB_46301| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 68

 Score = 40.7 bits (91), Expect = 8e-04
 Identities = 20/30 (66%), Positives = 21/30 (70%)
 Frame = +2

Query: 2   LGGNYSDNSTSAFALFKFTQSLAAAACFFY 91
           LG  Y D+S  AFALFKF QS AAA  FFY
Sbjct: 26  LGFAYPDDSAPAFALFKFVQSGAAAIAFFY 55


>SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38)
          Length = 475

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -3

Query: 505 REHLLRTYFIRKIGTPGFEHRCIATHECTGRLIL 404
           R+ LL+   +R I   GFEH     HEC  + IL
Sbjct: 50  RDFLLKPELLRAIVDCGFEHPSEVQHECIPQAIL 83


>SB_28853| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 208

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -3

Query: 505 REHLLRTYFIRKIGTPGFEHRCIATHECTGRLIL 404
           R+ LL+   +R I   GFEH     HEC  + IL
Sbjct: 50  RDFLLKPELLRAIVDCGFEHPSEVQHECIPQAIL 83


>SB_58276| Best HMM Match : MIB_HERC2 (HMM E-Value=8.3e-33)
          Length = 2822

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/54 (22%), Positives = 25/54 (46%)
 Frame = +3

Query: 363  FGINETCSEVVVALRIRRPVHSCVAMHRCSNPGVPIFLMKYVLNKCSRLTSTVK 524
            + +   CS++V A ++ R     VA ++ +     +     V+  CS+L +  K
Sbjct: 1907 YKVTRNCSQLVAAYKVTRNCSQLVAAYKVTRNCSQLVAAYKVIRNCSQLVAAYK 1960



 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/54 (22%), Positives = 25/54 (46%)
 Frame = +3

Query: 363  FGINETCSEVVVALRIRRPVHSCVAMHRCSNPGVPIFLMKYVLNKCSRLTSTVK 524
            + +   CS++V A ++ R     VA ++ +     +     V+  CS+L +  K
Sbjct: 1959 YKVTRNCSQLVAAYKVTRNCSQLVAAYKVTRNCSQLVAAYKVIRNCSQLVAAYK 2012


>SB_49200| Best HMM Match : GatB (HMM E-Value=6.4)
          Length = 151

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +1

Query: 316 RTHGPVTHAPQLTRSNLELMKHVLK 390
           R H  + + PQ T +NLELMK  LK
Sbjct: 79  RKHNRLDNFPQRTMANLELMKVFLK 103


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,447,484
Number of Sequences: 59808
Number of extensions: 222059
Number of successful extensions: 518
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)