BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov12g06 (579 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_51104| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 5e-05 SB_46301| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 8e-04 SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38) 29 3.6 SB_28853| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6 SB_58276| Best HMM Match : MIB_HERC2 (HMM E-Value=8.3e-33) 27 8.4 SB_49200| Best HMM Match : GatB (HMM E-Value=6.4) 27 8.4 >SB_51104| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 326 Score = 44.8 bits (101), Expect = 5e-05 Identities = 26/59 (44%), Positives = 27/59 (45%) Frame = +2 Query: 2 LGGNYSDNSTSAFALFKFTQSLAAAACFFYXXXXXXXXXXXXXXXXXXXGTACFCRVEW 178 LG Y D+S AFALFKF QS AAA FFY GT F VEW Sbjct: 256 LGFAYPDDSAPAFALFKFVQSGAAAIAFFYSLKLLLEWQLLILVIWSLLGTKGFFLVEW 314 >SB_46301| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 68 Score = 40.7 bits (91), Expect = 8e-04 Identities = 20/30 (66%), Positives = 21/30 (70%) Frame = +2 Query: 2 LGGNYSDNSTSAFALFKFTQSLAAAACFFY 91 LG Y D+S AFALFKF QS AAA FFY Sbjct: 26 LGFAYPDDSAPAFALFKFVQSGAAAIAFFY 55 >SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38) Length = 475 Score = 28.7 bits (61), Expect = 3.6 Identities = 14/34 (41%), Positives = 18/34 (52%) Frame = -3 Query: 505 REHLLRTYFIRKIGTPGFEHRCIATHECTGRLIL 404 R+ LL+ +R I GFEH HEC + IL Sbjct: 50 RDFLLKPELLRAIVDCGFEHPSEVQHECIPQAIL 83 >SB_28853| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 208 Score = 28.7 bits (61), Expect = 3.6 Identities = 14/34 (41%), Positives = 18/34 (52%) Frame = -3 Query: 505 REHLLRTYFIRKIGTPGFEHRCIATHECTGRLIL 404 R+ LL+ +R I GFEH HEC + IL Sbjct: 50 RDFLLKPELLRAIVDCGFEHPSEVQHECIPQAIL 83 >SB_58276| Best HMM Match : MIB_HERC2 (HMM E-Value=8.3e-33) Length = 2822 Score = 27.5 bits (58), Expect = 8.4 Identities = 12/54 (22%), Positives = 25/54 (46%) Frame = +3 Query: 363 FGINETCSEVVVALRIRRPVHSCVAMHRCSNPGVPIFLMKYVLNKCSRLTSTVK 524 + + CS++V A ++ R VA ++ + + V+ CS+L + K Sbjct: 1907 YKVTRNCSQLVAAYKVTRNCSQLVAAYKVTRNCSQLVAAYKVIRNCSQLVAAYK 1960 Score = 27.5 bits (58), Expect = 8.4 Identities = 12/54 (22%), Positives = 25/54 (46%) Frame = +3 Query: 363 FGINETCSEVVVALRIRRPVHSCVAMHRCSNPGVPIFLMKYVLNKCSRLTSTVK 524 + + CS++V A ++ R VA ++ + + V+ CS+L + K Sbjct: 1959 YKVTRNCSQLVAAYKVTRNCSQLVAAYKVTRNCSQLVAAYKVIRNCSQLVAAYK 2012 >SB_49200| Best HMM Match : GatB (HMM E-Value=6.4) Length = 151 Score = 27.5 bits (58), Expect = 8.4 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = +1 Query: 316 RTHGPVTHAPQLTRSNLELMKHVLK 390 R H + + PQ T +NLELMK LK Sbjct: 79 RKHNRLDNFPQRTMANLELMKVFLK 103 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,447,484 Number of Sequences: 59808 Number of extensions: 222059 Number of successful extensions: 518 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 459 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 518 length of database: 16,821,457 effective HSP length: 78 effective length of database: 12,156,433 effective search space used: 1385833362 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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