Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12g06
         (579 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69883-3|CAA93741.2|  450|Caenorhabditis elegans Hypothetical pr...    35   0.036
Z54327-7|CAD57690.1|  268|Caenorhabditis elegans Hypothetical pr...    32   0.26 
Z54327-6|CAA91120.1|  425|Caenorhabditis elegans Hypothetical pr...    32   0.26 
U08102-1|AAB65852.1|  417|Caenorhabditis elegans putative RNA he...    32   0.26 
U10401-6|AAA19061.1|  697|Caenorhabditis elegans Hmg protein 4 p...    31   0.45 
Z67995-2|CAA91944.2|  458|Caenorhabditis elegans Hypothetical pr...    31   0.78 
U28941-8|AAC71105.2|  470|Caenorhabditis elegans Hypothetical pr...    31   0.78 
AF000195-3|AAC24268.1|  689|Caenorhabditis elegans Hmg protein 3...    29   3.2  
Z72518-3|CAB63415.2|  704|Caenorhabditis elegans Hypothetical pr...    28   4.2  
Z49131-7|CAA88980.3|  704|Caenorhabditis elegans Hypothetical pr...    28   4.2  
Z81533-2|CAB04342.1|  432|Caenorhabditis elegans Hypothetical pr...    28   5.5  
AC024136-1|AAF35961.1|  755|Caenorhabditis elegans Hypothetical ...    28   5.5  
AC006656-6|AAF39879.1|  614|Caenorhabditis elegans Fem-3 mrna bi...    28   5.5  
U67949-2|AAB07560.2|  368|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>Z69883-3|CAA93741.2|  450|Caenorhabditis elegans Hypothetical
           protein C27C12.4 protein.
          Length = 450

 Score = 35.1 bits (77), Expect = 0.036
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = +2

Query: 2   LGGNYSDNSTSAFALFKFTQSLAAAACFFY 91
           +G  + ++  +AFA+FKF QS+AA   FFY
Sbjct: 377 IGQVFKEDPVNAFAIFKFFQSMAACVSFFY 406


>Z54327-7|CAD57690.1|  268|Caenorhabditis elegans Hypothetical
           protein C26D10.2b protein.
          Length = 268

 Score = 32.3 bits (70), Expect = 0.26
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -3

Query: 505 REHLLRTYFIRKIGTPGFEHRCIATHECTGRLIL 404
           R+ LL+   +R IG  GFEH     HEC  + IL
Sbjct: 44  RDFLLKPEILRAIGDCGFEHPSEVQHECIPQAIL 77


>Z54327-6|CAA91120.1|  425|Caenorhabditis elegans Hypothetical
           protein C26D10.2a protein.
          Length = 425

 Score = 32.3 bits (70), Expect = 0.26
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -3

Query: 505 REHLLRTYFIRKIGTPGFEHRCIATHECTGRLIL 404
           R+ LL+   +R IG  GFEH     HEC  + IL
Sbjct: 44  RDFLLKPEILRAIGDCGFEHPSEVQHECIPQAIL 77


>U08102-1|AAB65852.1|  417|Caenorhabditis elegans putative RNA
           helicase protein.
          Length = 417

 Score = 32.3 bits (70), Expect = 0.26
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -3

Query: 505 REHLLRTYFIRKIGTPGFEHRCIATHECTGRLIL 404
           R+ LL+   +R IG  GFEH     HEC  + IL
Sbjct: 43  RDFLLKPEILRAIGDCGFEHPSEVQHECIPQAIL 76


>U10401-6|AAA19061.1|  697|Caenorhabditis elegans Hmg protein 4
           protein.
          Length = 697

 Score = 31.5 bits (68), Expect = 0.45
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +2

Query: 401 LKDKTSGAFVCSDAPVFESRCTNFSNEIRPQQMFTIDFH 517
           +K KT   F   D P+FE  CTN SN I  +    ++FH
Sbjct: 113 VKGKTV-EFSWEDKPIFEIPCTNVSNVIANKNEAVLEFH 150


>Z67995-2|CAA91944.2|  458|Caenorhabditis elegans Hypothetical
           protein M153.2 protein.
          Length = 458

 Score = 30.7 bits (66), Expect = 0.78
 Identities = 17/54 (31%), Positives = 20/54 (37%)
 Frame = +2

Query: 14  YSDNSTSAFALFKFTQSLAAAACFFYXXXXXXXXXXXXXXXXXXXGTACFCRVE 175
           +S  S  AF+LFK  QS  + A FFY                      CF  VE
Sbjct: 365 FSKQSAQAFSLFKLYQSALSCAAFFYAPVLQLYWHLVILVVTSLFAACCFFYVE 418


>U28941-8|AAC71105.2|  470|Caenorhabditis elegans Hypothetical
           protein F31D5.2 protein.
          Length = 470

 Score = 30.7 bits (66), Expect = 0.78
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +2

Query: 14  YSDNSTSAFALFKFTQSLAAAACFF 88
           YS+ S+ AFALFKF  ++++   FF
Sbjct: 366 YSEESSHAFALFKFYSAISSTIAFF 390


>AF000195-3|AAC24268.1|  689|Caenorhabditis elegans Hmg protein 3
           protein.
          Length = 689

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 425 FVCSDAPVFESRCTNFSNEIRPQQMFTIDFH 517
           F   + P+FE  CTN SN I  +    ++FH
Sbjct: 120 FSWENEPIFEIPCTNVSNVIANKNEAILEFH 150


>Z72518-3|CAB63415.2|  704|Caenorhabditis elegans Hypothetical
           protein ZC373.1 protein.
          Length = 704

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 354 PFKFGINETCSEVVVALRIRRPVHSCVAMHRCSNPGVPI 470
           P + G +   S + VALR++  +   V + +  NPG P+
Sbjct: 497 PNEAGFDSPHSHIGVALRLKSEIQDAVVLDQYCNPGNPL 535


>Z49131-7|CAA88980.3|  704|Caenorhabditis elegans Hypothetical
           protein ZC373.1 protein.
          Length = 704

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 354 PFKFGINETCSEVVVALRIRRPVHSCVAMHRCSNPGVPI 470
           P + G +   S + VALR++  +   V + +  NPG P+
Sbjct: 497 PNEAGFDSPHSHIGVALRLKSEIQDAVVLDQYCNPGNPL 535


>Z81533-2|CAB04342.1|  432|Caenorhabditis elegans Hypothetical
           protein F36G9.3 protein.
          Length = 432

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 14  YSDNSTSAFALFKFTQSLAAAACFFY 91
           Y + S  AFA+FKF +SL +   F +
Sbjct: 361 YPEKSAQAFAIFKFFESLLSCFTFIF 386


>AC024136-1|AAF35961.1|  755|Caenorhabditis elegans Hypothetical
           protein F54A3.4 protein.
          Length = 755

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 354 PFKFGINETCSEVVVALRIRRPVHSCVAMHRCSNPGVPI 470
           P +   N   S + VALR++  +   V + +  NPG P+
Sbjct: 456 PNEAAFNSPSSHIGVALRLKHEIPGAVILDQYCNPGNPL 494


>AC006656-6|AAF39879.1|  614|Caenorhabditis elegans Fem-3 mrna
           binding factor protein 1 protein.
          Length = 614

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 397 TTTSEHVSLIPNLNGLAAGHVSLVRVFAP 311
           +T SEH  L    NG+  G++ L+R F+P
Sbjct: 586 STASEHDGLELEKNGIEEGNLRLMRTFSP 614


>U67949-2|AAB07560.2|  368|Caenorhabditis elegans Hypothetical
           protein F55A4.2 protein.
          Length = 368

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 15/44 (34%), Positives = 18/44 (40%)
 Frame = +3

Query: 333 DTCPAANPFKFGINETCSEVVVALRIRRPVHSCVAMHRCSNPGV 464
           DT  A  PF    N TC    V + I    H C  +H C   G+
Sbjct: 250 DTASATRPFS--PNATCDNCKVNMDIDSWRHECDCIHPCDVRGI 291


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,949,661
Number of Sequences: 27780
Number of extensions: 158217
Number of successful extensions: 390
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 389
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)