BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov12g06 (579 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z69883-3|CAA93741.2| 450|Caenorhabditis elegans Hypothetical pr... 35 0.036 Z54327-7|CAD57690.1| 268|Caenorhabditis elegans Hypothetical pr... 32 0.26 Z54327-6|CAA91120.1| 425|Caenorhabditis elegans Hypothetical pr... 32 0.26 U08102-1|AAB65852.1| 417|Caenorhabditis elegans putative RNA he... 32 0.26 U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4 p... 31 0.45 Z67995-2|CAA91944.2| 458|Caenorhabditis elegans Hypothetical pr... 31 0.78 U28941-8|AAC71105.2| 470|Caenorhabditis elegans Hypothetical pr... 31 0.78 AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3... 29 3.2 Z72518-3|CAB63415.2| 704|Caenorhabditis elegans Hypothetical pr... 28 4.2 Z49131-7|CAA88980.3| 704|Caenorhabditis elegans Hypothetical pr... 28 4.2 Z81533-2|CAB04342.1| 432|Caenorhabditis elegans Hypothetical pr... 28 5.5 AC024136-1|AAF35961.1| 755|Caenorhabditis elegans Hypothetical ... 28 5.5 AC006656-6|AAF39879.1| 614|Caenorhabditis elegans Fem-3 mrna bi... 28 5.5 U67949-2|AAB07560.2| 368|Caenorhabditis elegans Hypothetical pr... 27 9.6 >Z69883-3|CAA93741.2| 450|Caenorhabditis elegans Hypothetical protein C27C12.4 protein. Length = 450 Score = 35.1 bits (77), Expect = 0.036 Identities = 14/30 (46%), Positives = 21/30 (70%) Frame = +2 Query: 2 LGGNYSDNSTSAFALFKFTQSLAAAACFFY 91 +G + ++ +AFA+FKF QS+AA FFY Sbjct: 377 IGQVFKEDPVNAFAIFKFFQSMAACVSFFY 406 >Z54327-7|CAD57690.1| 268|Caenorhabditis elegans Hypothetical protein C26D10.2b protein. Length = 268 Score = 32.3 bits (70), Expect = 0.26 Identities = 15/34 (44%), Positives = 19/34 (55%) Frame = -3 Query: 505 REHLLRTYFIRKIGTPGFEHRCIATHECTGRLIL 404 R+ LL+ +R IG GFEH HEC + IL Sbjct: 44 RDFLLKPEILRAIGDCGFEHPSEVQHECIPQAIL 77 >Z54327-6|CAA91120.1| 425|Caenorhabditis elegans Hypothetical protein C26D10.2a protein. Length = 425 Score = 32.3 bits (70), Expect = 0.26 Identities = 15/34 (44%), Positives = 19/34 (55%) Frame = -3 Query: 505 REHLLRTYFIRKIGTPGFEHRCIATHECTGRLIL 404 R+ LL+ +R IG GFEH HEC + IL Sbjct: 44 RDFLLKPEILRAIGDCGFEHPSEVQHECIPQAIL 77 >U08102-1|AAB65852.1| 417|Caenorhabditis elegans putative RNA helicase protein. Length = 417 Score = 32.3 bits (70), Expect = 0.26 Identities = 15/34 (44%), Positives = 19/34 (55%) Frame = -3 Query: 505 REHLLRTYFIRKIGTPGFEHRCIATHECTGRLIL 404 R+ LL+ +R IG GFEH HEC + IL Sbjct: 43 RDFLLKPEILRAIGDCGFEHPSEVQHECIPQAIL 76 >U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4 protein. Length = 697 Score = 31.5 bits (68), Expect = 0.45 Identities = 16/39 (41%), Positives = 21/39 (53%) Frame = +2 Query: 401 LKDKTSGAFVCSDAPVFESRCTNFSNEIRPQQMFTIDFH 517 +K KT F D P+FE CTN SN I + ++FH Sbjct: 113 VKGKTV-EFSWEDKPIFEIPCTNVSNVIANKNEAVLEFH 150 >Z67995-2|CAA91944.2| 458|Caenorhabditis elegans Hypothetical protein M153.2 protein. Length = 458 Score = 30.7 bits (66), Expect = 0.78 Identities = 17/54 (31%), Positives = 20/54 (37%) Frame = +2 Query: 14 YSDNSTSAFALFKFTQSLAAAACFFYXXXXXXXXXXXXXXXXXXXGTACFCRVE 175 +S S AF+LFK QS + A FFY CF VE Sbjct: 365 FSKQSAQAFSLFKLYQSALSCAAFFYAPVLQLYWHLVILVVTSLFAACCFFYVE 418 >U28941-8|AAC71105.2| 470|Caenorhabditis elegans Hypothetical protein F31D5.2 protein. Length = 470 Score = 30.7 bits (66), Expect = 0.78 Identities = 12/25 (48%), Positives = 18/25 (72%) Frame = +2 Query: 14 YSDNSTSAFALFKFTQSLAAAACFF 88 YS+ S+ AFALFKF ++++ FF Sbjct: 366 YSEESSHAFALFKFYSAISSTIAFF 390 >AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3 protein. Length = 689 Score = 28.7 bits (61), Expect = 3.2 Identities = 12/31 (38%), Positives = 17/31 (54%) Frame = +2 Query: 425 FVCSDAPVFESRCTNFSNEIRPQQMFTIDFH 517 F + P+FE CTN SN I + ++FH Sbjct: 120 FSWENEPIFEIPCTNVSNVIANKNEAILEFH 150 >Z72518-3|CAB63415.2| 704|Caenorhabditis elegans Hypothetical protein ZC373.1 protein. Length = 704 Score = 28.3 bits (60), Expect = 4.2 Identities = 12/39 (30%), Positives = 21/39 (53%) Frame = +3 Query: 354 PFKFGINETCSEVVVALRIRRPVHSCVAMHRCSNPGVPI 470 P + G + S + VALR++ + V + + NPG P+ Sbjct: 497 PNEAGFDSPHSHIGVALRLKSEIQDAVVLDQYCNPGNPL 535 >Z49131-7|CAA88980.3| 704|Caenorhabditis elegans Hypothetical protein ZC373.1 protein. Length = 704 Score = 28.3 bits (60), Expect = 4.2 Identities = 12/39 (30%), Positives = 21/39 (53%) Frame = +3 Query: 354 PFKFGINETCSEVVVALRIRRPVHSCVAMHRCSNPGVPI 470 P + G + S + VALR++ + V + + NPG P+ Sbjct: 497 PNEAGFDSPHSHIGVALRLKSEIQDAVVLDQYCNPGNPL 535 >Z81533-2|CAB04342.1| 432|Caenorhabditis elegans Hypothetical protein F36G9.3 protein. Length = 432 Score = 27.9 bits (59), Expect = 5.5 Identities = 11/26 (42%), Positives = 16/26 (61%) Frame = +2 Query: 14 YSDNSTSAFALFKFTQSLAAAACFFY 91 Y + S AFA+FKF +SL + F + Sbjct: 361 YPEKSAQAFAIFKFFESLLSCFTFIF 386 >AC024136-1|AAF35961.1| 755|Caenorhabditis elegans Hypothetical protein F54A3.4 protein. Length = 755 Score = 27.9 bits (59), Expect = 5.5 Identities = 12/39 (30%), Positives = 20/39 (51%) Frame = +3 Query: 354 PFKFGINETCSEVVVALRIRRPVHSCVAMHRCSNPGVPI 470 P + N S + VALR++ + V + + NPG P+ Sbjct: 456 PNEAAFNSPSSHIGVALRLKHEIPGAVILDQYCNPGNPL 494 >AC006656-6|AAF39879.1| 614|Caenorhabditis elegans Fem-3 mrna binding factor protein 1 protein. Length = 614 Score = 27.9 bits (59), Expect = 5.5 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = -3 Query: 397 TTTSEHVSLIPNLNGLAAGHVSLVRVFAP 311 +T SEH L NG+ G++ L+R F+P Sbjct: 586 STASEHDGLELEKNGIEEGNLRLMRTFSP 614 >U67949-2|AAB07560.2| 368|Caenorhabditis elegans Hypothetical protein F55A4.2 protein. Length = 368 Score = 27.1 bits (57), Expect = 9.6 Identities = 15/44 (34%), Positives = 18/44 (40%) Frame = +3 Query: 333 DTCPAANPFKFGINETCSEVVVALRIRRPVHSCVAMHRCSNPGV 464 DT A PF N TC V + I H C +H C G+ Sbjct: 250 DTASATRPFS--PNATCDNCKVNMDIDSWRHECDCIHPCDVRGI 291 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 8,949,661 Number of Sequences: 27780 Number of extensions: 158217 Number of successful extensions: 390 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 378 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 389 length of database: 12,740,198 effective HSP length: 78 effective length of database: 10,573,358 effective search space used: 1205362812 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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