Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12g06
         (579 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g05950.1 68415.m00646 hypothetical protein                          30   1.3  
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative              29   1.7  
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)...    29   1.7  
At5g59650.1 68418.m07479 leucine-rich repeat protein kinase, put...    27   6.8  
At1g72280.1 68414.m08356 endoplasmic reticulum oxidoreductin 1 (...    27   9.0  

>At2g05950.1 68415.m00646 hypothetical protein
          Length = 183

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 404 KDKTSGAFVCSDAPVFESRCTNFSNEIRPQQ 496
           K K+ G FVC  A +   +C N  ++I  Q+
Sbjct: 105 KSKSDGVFVCKKAELIAKKCRNMEHQILSQR 135


>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
          Length = 427

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -3

Query: 505 REHLLRTYFIRKIGTPGFEHRCIATHECTGRLIL 404
           R+ LL+   +R I   GFEH     HEC  + IL
Sbjct: 49  RDFLLKPELLRAIVDSGFEHPSEVQHECIPQAIL 82


>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
           DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
           EMBL:ATH010466
          Length = 427

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -3

Query: 505 REHLLRTYFIRKIGTPGFEHRCIATHECTGRLIL 404
           R+ LL+   +R I   GFEH     HEC  + IL
Sbjct: 49  RDFLLKPELLRAIVDSGFEHPSEVQHECIPQAIL 82


>At5g59650.1 68418.m07479 leucine-rich repeat protein kinase,
           putative contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 892

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -3

Query: 532 CYSFTVEVNREHLLRTYFI 476
           CYS +V+ NR++L+R  FI
Sbjct: 93  CYSLSVDKNRKYLIRARFI 111


>At1g72280.1 68414.m08356 endoplasmic reticulum oxidoreductin 1
           (ERO1) family protein contains Pfam domain, PF04137:
           Endoplasmic Reticulum Oxidoreductin 1 (ERO1)
          Length = 469

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 330 SDTCPAANPFKFGINETCSEVVVALRIRRPVHSCVAMH 443
           S+ CP     K+   ETC E  V  ++   +HS ++MH
Sbjct: 219 SENCP-----KYSSGETCPEKKVLYKLISGLHSSISMH 251


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,211,663
Number of Sequences: 28952
Number of extensions: 139671
Number of successful extensions: 323
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)