SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12g05
         (547 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory recept...    24   0.76 
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    22   3.0  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   4.0  
DQ855494-1|ABH88181.1|   99|Tribolium castaneum chemosensory pro...    21   5.3  
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    21   5.3  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    21   7.0  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   7.0  
AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory recept...    21   7.0  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    21   9.3  
AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory recept...    21   9.3  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    21   9.3  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   9.3  

>AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory receptor
           candidate 9 protein.
          Length = 408

 Score = 24.2 bits (50), Expect = 0.76
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -3

Query: 527 LSLLDITLFMNNIAFVVFEL 468
           LS + +T F+NN  F++F++
Sbjct: 285 LSYIILTSFLNNFYFIIFQV 304


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +1

Query: 217 PETAAGDGEPVDDPSPFPSRAQRTPRNSRTSLKTLLLVHKY 339
           P+T+A  G P+   +    +  R PR   T+ + L L  K+
Sbjct: 94  PQTSAPTGPPIVRCALRKHKPNRKPRTPFTTQQLLALEKKF 134


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 64  SCARGSPVRTVDSSQDIEIP 123
           +C RG  VRT+++ Q +  P
Sbjct: 9   ACMRGGSVRTLNNYQQVMEP 28


>DQ855494-1|ABH88181.1|   99|Tribolium castaneum chemosensory
          protein 8 protein.
          Length = 99

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -1

Query: 85 PEILGHNCRR 56
          PEI+G NC R
Sbjct: 57 PEIIGKNCER 66


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -1

Query: 412 INLLYLSKG*NYSIFATKMTLIPCRICVLRVRFSMKF 302
           INLL   +  N   FA KM  + C I  L + F+  F
Sbjct: 176 INLLLTEQLQNRRFFAKKMEGLVCSIKELNMIFNEFF 212


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -3

Query: 536 ITFLSLLDITLFMNNIAFVVFELSLGGNHMIFVTEY 429
           I+F+       F+NN+A +   L+  G ++ + T+Y
Sbjct: 100 ISFMHKKSFKNFVNNVAALDETLAKLGQYINYETDY 135


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 6/13 (46%), Positives = 7/13 (53%)
 Frame = +2

Query: 329 YTNTTWY*CHFCC 367
           Y    +Y CH CC
Sbjct: 642 YAADVFYICHVCC 654


>AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory
          receptor candidate 35 protein.
          Length = 251

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -1

Query: 37 EAGFENFLKFF 5
          E+GFENF+K +
Sbjct: 31 ESGFENFVKTY 41


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -2

Query: 231 CCCLRT 214
           CCCLRT
Sbjct: 190 CCCLRT 195


>AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory receptor
           candidate 52 protein.
          Length = 360

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 357 IFVANIL*F*PFDKYNKFIFTNI 425
           +FVA+   F  +  Y  +IF NI
Sbjct: 117 LFVASNCFFWSYQSYMSYIFANI 139


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 357 IFVANIL*F*PFDKYNKFIFTNI 425
           +FVA+   F  +  Y  +IF NI
Sbjct: 117 LFVASNCFFWSYQSYMSYIFANI 139


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 382 FNPLTNTTNLFLPIF 426
           + P+TN TNL  P +
Sbjct: 350 YQPVTNLTNLTYPSY 364


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.317    0.132    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,959
Number of Sequences: 336
Number of extensions: 2743
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13411456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -