Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12g05
         (547 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    27   2.4  
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    26   3.2  
SPBC1709.19c |||NifU-like protein|Schizosaccharomyces pombe|chr ...    26   3.2  
SPBC17D11.08 |||WD repeat protein, human WDR68 family|Schizosacc...    26   3.2  
SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces p...    25   5.5  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    25   5.5  
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo...    25   5.5  
SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces pom...    25   7.3  

>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 365  NKNDINTMSYLCTKSKVFNEVREFRGVL 282
            NK D ++M  LC  +KV   VR+  GVL
Sbjct: 1026 NKEDASSMKGLCCFAKVERIVRQTNGVL 1053


>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +1

Query: 112 IEIPATAAHQDESGVRIN-DSIVSDHTSQEPLTIFGPETAAGDGEPVDDPSPFPSRAQRT 288
           +++P++AA    SG R    SI +D  S +  ++     ++  G P  D +P  S A   
Sbjct: 138 LQVPSSAA----SGARTQRTSITNDPQSSQSSSVSRNPASSRAGSPTRDNAPAASPASSE 193

Query: 289 PR 294
           PR
Sbjct: 194 PR 195


>SPBC1709.19c |||NifU-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 260

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +1

Query: 379 SFNPLTNTTNLFLPIFIYSVTKIIWFPPKDNSNTTNAMLFI 501
           +F P+++  N+F P F     + IW   ++  N  NA+ F+
Sbjct: 20  TFLPVSSAGNVFTPRFQLQAIRSIWIRSEETPN-ENALKFL 59


>SPBC17D11.08 |||WD repeat protein, human WDR68
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 430 YSVTKIIWFPPKDNSNTTNAML 495
           Y VTK++W P    SNT + +L
Sbjct: 108 YPVTKLLWNPSSVGSNTDSQLL 129


>SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +1

Query: 103 SQDIEIPATAAHQDESGVRINDSIVSDHTSQEPLTIFGPE 222
           S++   PA A   ++     N+SI+S  TSQ P T  G E
Sbjct: 85  SKETSAPAAAVEIEKE----NESIISKETSQAPETSTGAE 120


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 25/89 (28%), Positives = 35/89 (39%)
 Frame = +1

Query: 25  QSRLQFLTGKSADSCARGSPVRTVDSSQDIEIPATAAHQDESGVRINDSIVSDHTSQEPL 204
           QS +Q L G SA S   G P ++++ S+       A H          + VS  TS  P 
Sbjct: 368 QSLMQELGGGSAISNGNGEPQKSIEFSESGAASPQAGHPPPWAAA--STSVSSSTS-SPA 424

Query: 205 TIFGPETAAGDGEPVDDPSPFPSRAQRTP 291
               P ++A    P   P   P+  Q  P
Sbjct: 425 PWAKPASSAAPSNPA--PWQQPAAPQSAP 451


>SPBC27.02c |ask1|mug181|DASH complex subunit
           Ask1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 14/52 (26%), Positives = 20/52 (38%)
 Frame = +1

Query: 187 TSQEPLTIFGPETAAGDGEPVDDPSPFPSRAQRTPRNSRTSLKTLLLVHKYD 342
           T +EP  +   E    D  P   PSP   +      N R S   L L  +++
Sbjct: 193 TPREPKNLQSQEVMDIDSSPFVSPSPISMKMDMPSLNDRNSSHALSLFAEFE 244


>SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +1

Query: 364 LQIYYSFNPLTNTTNLFLPIFIYSVTKIIWFPPKDNSNTTNAML-FINSV 510
           L ++Y+F P   T    + +   S   ++   P++N N  + ML  INSV
Sbjct: 277 LLVFYTFIPPRFTIQTSVTLINASFATLVSLYPEENENLNSIMLNGINSV 326


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.132    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,238,182
Number of Sequences: 5004
Number of extensions: 46028
Number of successful extensions: 157
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)