Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12g05
(547 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25652| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_15716| Best HMM Match : ABC_tran (HMM E-Value=0) 29 3.3
SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_18926| Best HMM Match : Colipase_C (HMM E-Value=0.0043) 28 4.3
SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_47435| Best HMM Match : RVT_1 (HMM E-Value=7.8e-23) 28 5.7
SB_58207| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_4546| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_59072| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_40142| Best HMM Match : DUF827 (HMM E-Value=1.2) 27 7.6
SB_5819| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
>SB_25652| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 124
Score = 30.3 bits (65), Expect = 1.1
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +1
Query: 88 RTVDSSQDIEIPATAAHQDESGVRINDSIVSDHTSQEPLTIFGPETAAGDGEPVDDPSPF 267
R VD S +IE + + ++ ++ D + D+T Q P P + A D + + +P
Sbjct: 51 RLVDRSYEIETDSVSYRRNSVDIKRTDEGIQDNTQQSPTAPMQPASNAQDSQQ-HEVAP- 108
Query: 268 PSRAQRTP 291
PS+ P
Sbjct: 109 PSQDDNAP 116
>SB_15716| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1702
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +1
Query: 322 LLVHKYDMVLMSFLLQIYYS-FNPLTNTTNLFLPIFIYSVTKIIWFPPKDNSNTTNAMLF 498
L+V + ++M FL+ +++S N + + T + WF NS+ A +F
Sbjct: 50 LVVFMFATIMMCFLISVFFSRANVSAACGGIIFFVTYLPYTMVRWFEAFMNSSQIAAAVF 109
Query: 499 INS 507
+NS
Sbjct: 110 MNS 112
>SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3066
Score = 28.3 bits (60), Expect = 4.3
Identities = 30/96 (31%), Positives = 40/96 (41%), Gaps = 1/96 (1%)
Frame = +1
Query: 13 LENSQSRLQFLTGKSADSCARGSPVRTVDSSQDIEIPATAAHQDESGVRINDSIVSD-HT 189
L N Q R T K+ + A + +RTV S IE P +++ VR N + S H+
Sbjct: 2380 LINKQPRQTRKTTKACVAEAPFTHIRTVKRSVYIETPLLDEKEEQLAVR-NPYVHSVIHS 2438
Query: 190 SQEPLTIFGPETAAGDGEPVDDPSPFPSRAQRTPRN 297
EP DG P P P P AQ R+
Sbjct: 2439 LHEP-----------DGSPASRPMPQPGAAQSLERS 2463
>SB_18926| Best HMM Match : Colipase_C (HMM E-Value=0.0043)
Length = 811
Score = 28.3 bits (60), Expect = 4.3
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = -3
Query: 371 ICNKNDINTMSYLCTKSKVFNEVREFRGVLCARDGKGEGSSTGSPSP 231
IC + + + + +L ++ N+ RE GV C + E +S SP P
Sbjct: 471 ICEQEECSCLDHLSANAEYSNK-REMEGVTCVESTRLELTSCVSPPP 516
>SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1378
Score = 27.9 bits (59), Expect = 5.7
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = +1
Query: 136 HQDESGVRINDSIVSDHTSQEPLTIFGPETAAGDGEPVDDPSPFPSRAQRTPRNSRTSLK 315
H+D V I +++ T + L+ ++ P SP PSR+ R+PR+ R K
Sbjct: 976 HEDLERV-IEGRPIAEKTDKNVLSNLTVGSSRSVSPPAPSSSPTPSRSPRSPRDVRALRK 1034
Query: 316 T 318
+
Sbjct: 1035 S 1035
>SB_47435| Best HMM Match : RVT_1 (HMM E-Value=7.8e-23)
Length = 364
Score = 27.9 bits (59), Expect = 5.7
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -2
Query: 165 VNAYSTFILMSCCSWNLDILARINCPDR 82
V+ YST++ ++ C L I+A+ CP +
Sbjct: 144 VDLYSTYVDLTKCRGPLKIMAKFGCPSK 171
>SB_58207| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 481
Score = 27.5 bits (58), Expect = 7.6
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Frame = +1
Query: 403 TNLFLPIFIYSVTKIIWFPPKDNSN-TTNAML--FINSVMS 516
T+ F+ + + +V +WFPP + + TT AM+ +I S S
Sbjct: 153 TSSFMTVCVPAVLSAVWFPPHERATATTLAMVAGYIGSAAS 193
>SB_4546| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 514
Score = 27.5 bits (58), Expect = 7.6
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 256 PSPFPSRAQRTPRNSRTSLKTLLLVHK 336
P+P P+ +TP + + +KT +VHK
Sbjct: 288 PTPLPNSDDKTPDDKKLKVKTPSVVHK 314
>SB_59072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 361
Score = 27.5 bits (58), Expect = 7.6
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +1
Query: 217 PETAAGDGEPVDDPSPFPSRAQRTPRNSRTSLKTLLLVHKYDMVLMSFLLQ 369
PET + + D F + A+ P NSR + L L+ YD + +++
Sbjct: 32 PETLLCTNDVLSDKKDFSTFARTIPANSRLAPPLLKLLQLYDWAWIGLVVE 82
>SB_40142| Best HMM Match : DUF827 (HMM E-Value=1.2)
Length = 334
Score = 27.5 bits (58), Expect = 7.6
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +1
Query: 220 ETAAGDGEPVDDPSPFPSRAQRTPRNSRTSLKTL 321
E + +P D+P P P R R R +R TL
Sbjct: 135 EVREAETKPSDEPPPLPERTDRLERIAREKTLTL 168
>SB_5819| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 176
Score = 27.5 bits (58), Expect = 7.6
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 256 PSPFPSRAQRTPRNSRTSLKTLLLVHK 336
P+P P+ +TP + + +KT +VHK
Sbjct: 77 PTPLPNSDDKTPDDKKLKVKTPSVVHK 103
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.317 0.132 0.379
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,298,983
Number of Sequences: 59808
Number of extensions: 329002
Number of successful extensions: 1133
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1121
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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