Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12g05
         (547 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    31   0.41 
AF016450-10|AAB65990.1|  166|Caenorhabditis elegans Hypothetical...    30   0.95 
U80029-13|AAB37592.2|  429|Caenorhabditis elegans Hypothetical p...    30   1.2  
Z71264-2|CAA95830.1| 1202|Caenorhabditis elegans Hypothetical pr...    28   3.8  
U39472-6|AAK31392.1|  218|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AL132853-4|CAB60442.1| 1293|Caenorhabditis elegans Hypothetical ...    27   6.7  
Z82264-1|CAB05159.1| 1566|Caenorhabditis elegans Hypothetical pr...    27   8.8  
AF024501-8|AAN65318.1|  550|Caenorhabditis elegans Hypothetical ...    27   8.8  

>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
            K06A9.1b protein.
          Length = 2232

 Score = 31.5 bits (68), Expect = 0.41
 Identities = 29/104 (27%), Positives = 42/104 (40%), Gaps = 5/104 (4%)
 Frame = +1

Query: 13   LENSQSRLQFLTGKSADSCARGSPVRTVDSS-----QDIEIPATAAHQDESGVRINDSIV 177
            +  S S    +T  S+++   GS  +T  SS         IP+T      SG  I+D   
Sbjct: 1316 VSGSNSSGSTVTIGSSEASTSGSSFKTSPSSISPVPTSSPIPSTTFASSTSGSTISDVSS 1375

Query: 178  SDHTSQEPLTIFGPETAAGDGEPVDDPSPFPSRAQRTPRNSRTS 309
               TS  PL+   P T     +     S   S+A  +P  S+TS
Sbjct: 1376 VSTTSLAPLSSSLPSTVPSSTQSFSSTSEGSSKASSSPVPSQTS 1419


>AF016450-10|AAB65990.1|  166|Caenorhabditis elegans Hypothetical
           protein B0238.12 protein.
          Length = 166

 Score = 30.3 bits (65), Expect = 0.95
 Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = -3

Query: 371 ICNKNDINTMSYLCTKSKVFNEVRE--FRGVLCARDGKGEGSSTGSPS 234
           +C K  IN +   C    V NE+     R   C+R G G GSST  PS
Sbjct: 61  MCTKQCINNVCQ-CRSGYVRNEITRQCVRQAQCSRPGTGFGSSTPFPS 107


>U80029-13|AAB37592.2|  429|Caenorhabditis elegans Hypothetical
           protein T20D4.5 protein.
          Length = 429

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 21/69 (30%), Positives = 29/69 (42%)
 Frame = +1

Query: 313 KTLLLVHKYDMVLMSFLLQIYYSFNPLTNTTNLFLPIFIYSVTKIIWFPPKDNSNTTNAM 492
           KTL L H  D V M+ ++     F       +  +   I    K + FP   +SNTT + 
Sbjct: 194 KTLALDHNIDYVTMNIIIHKPIKFLKTNAKESSGVTFSIEVYWKTVNFPTPVSSNTTTSE 253

Query: 493 LFINSVMSN 519
            F  S  SN
Sbjct: 254 KFSTSSRSN 262


>Z71264-2|CAA95830.1| 1202|Caenorhabditis elegans Hypothetical
           protein K07G5.3 protein.
          Length = 1202

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 226 AAGDGEPVDDPSPFPSRAQRTPRNSRTSLKTLLLVHK 336
           A GDGE    P PF    +   +N R S+K  L+  K
Sbjct: 41  APGDGEQSPSPGPFTKDEKDKKQNRRESIKEHLMKFK 77


>U39472-6|AAK31392.1|  218|Caenorhabditis elegans Hypothetical
           protein B0304.2 protein.
          Length = 218

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 25/75 (33%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
 Frame = +1

Query: 19  NSQSRLQFLTGKSADSCARGSPVRTVDSSQDIEI-PATAAHQDESG-----VRINDSIVS 180
           ++ S L   T +S DS   G P     +S DIEI P   A +  SG     VR   S  +
Sbjct: 71  SNDSNLVRNTARSPDSSMNGRPQTRRSTSSDIEISPRVRAMRSTSGSSMDLVRTVSSFCT 130

Query: 181 DHTSQEPLTIFGPET 225
           D  S +  T  G  T
Sbjct: 131 DSISPKFFTNHGSTT 145


>AL132853-4|CAB60442.1| 1293|Caenorhabditis elegans Hypothetical
           protein Y80D3A.8 protein.
          Length = 1293

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 269 GKGEGSSTGSPSPAAVSGPNIVKGSCEVWSETIESL 162
           G G G+S+G PS    +GP +   +  V S T+ ++
Sbjct: 827 GTGNGTSSGGPSGNTGTGPTVGVTAAVVGSSTVSTV 862


>Z82264-1|CAB05159.1| 1566|Caenorhabditis elegans Hypothetical protein
            C49C3.4 protein.
          Length = 1566

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 328  VHKYDMVLMSFLLQIYYSFNPLTNTTNLFLPIFIYSVTKIIWF 456
            + K  M    FL+Q Y + +   +    F+P F+ S T I W+
Sbjct: 1281 IAKAAMTTGGFLIQSYITDDVKGHLDTQFIPDFLQSSTSIAWY 1323


>AF024501-8|AAN65318.1|  550|Caenorhabditis elegans Hypothetical
           protein F39E9.12 protein.
          Length = 550

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = +1

Query: 319 LLLVHKYDMVLMSFLLQIYYSFNPLTNTTNLFLPIFIYSVTKIIWFPP 462
           L++V    ++L SFL  + + FN   +     LP+FI  +  +I++PP
Sbjct: 305 LIIVLTGLIILGSFLAAVDFIFNNFYSIVIFTLPVFI--LIAVIFYPP 350


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.317    0.132    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,389,389
Number of Sequences: 27780
Number of extensions: 259217
Number of successful extensions: 1015
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)