Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12g05
         (547 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   3.5  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              22   4.7  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   4.7  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   6.2  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   8.2  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 8/38 (21%), Positives = 15/38 (39%)
 Frame = +1

Query: 373 YYSFNPLTNTTNLFLPIFIYSVTKIIWFPPKDNSNTTN 486
           Y S + +   + +  P+F  ++    WF     S   N
Sbjct: 417 YNSVSKIDRASRIVFPLFFLAINVFYWFAYLSRSERIN 454


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 43 LTGKSADSCARGSPVRTVD 99
          LT K   +C R SPV T++
Sbjct: 24 LTAKLLGNCVRVSPVITIE 42


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 144 ILMSCCSWNLDIL 106
           ++MSCC W  D L
Sbjct: 7   VVMSCCCWCCDNL 19


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = +1

Query: 172 IVSDHTSQEPLT--IFGPETAAGDGEPV 249
           +V D +S + +   I GP T  GD +PV
Sbjct: 353 LVQDISSPDAVEYGIIGPTTCMGDHKPV 380


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/33 (27%), Positives = 15/33 (45%)
 Frame = +1

Query: 166 DSIVSDHTSQEPLTIFGPETAAGDGEPVDDPSP 264
           D I+  +  + PLT    +T     +P + P P
Sbjct: 154 DEIIERNGDKPPLTYHQFQTVVASMDPPEPPVP 186


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.132    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,916
Number of Sequences: 438
Number of extensions: 3152
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)