Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12g05
         (547 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g06890.1 68414.m00732 transporter-related low similarity to S...    31   0.66 
At4g00930.1 68417.m00126 COP1-interacting protein 4.1 (CIP4.1) i...    29   1.5  
At1g30750.1 68414.m03758 expressed protein                             28   3.5  
At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01...    28   3.5  
At1g36990.1 68414.m04611 expressed protein contains PS00070: Ald...    28   4.7  
At4g29790.1 68417.m04242 expressed protein                             27   6.2  
At1g23540.1 68414.m02960 protein kinase family protein contains ...    27   6.2  
At4g33750.1 68417.m04792 expressed protein                             27   8.2  
At4g22990.1 68417.m03317 SPX (SYG1/Pho81/XPR1) domain-containing...    27   8.2  
At3g53210.1 68416.m05863 nodulin MtN21 family protein similar to...    27   8.2  

>At1g06890.1 68414.m00732 transporter-related low similarity to
           SP|Q9NTN3 UDP-glucuronic acid/UDP-N-acetylgalactosamine
           transporter {Homo sapiens}, SP|Q95YI5 UDP-sugar
           transporter UST74c {Drosophila melanogaster}, SP|Q18779
           UDP-sugar transporter sqv-7 {Caenorhabditis elegans};
           contains 8 predicted transmembrane domains
          Length = 357

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -1

Query: 418 VKINLLYLSKG*NYSIF--ATKMTLIPCRICVLRVRFSMKFVNSVAFS 281
           + I LL LS G N   F   TK+ +IPC + +  + F  KF   + FS
Sbjct: 84  ISIGLLNLSLGFNSVGFYQMTKLAIIPCTVLLETLFFRKKFSRKIQFS 131


>At4g00930.1 68417.m00126 COP1-interacting protein 4.1 (CIP4.1)
           identical to cDNA CIP4.1 mRNA for COP1-interacting
           protein 4.1,  GI:13160649
          Length = 976

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -3

Query: 365 NKNDINTMSYLCTKSKVFNEVREFRG-VLCARDGKGEGSSTGSPSPAAVS 219
           +KNDIN  +   T SK+    RE  G +L  + G GE +  G+    A S
Sbjct: 506 SKNDINKSTAATTTSKIIVNEREKMGDILVDKVGSGEATLIGADKIQAAS 555


>At1g30750.1 68414.m03758 expressed protein
          Length = 212

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
 Frame = +1

Query: 112 IEIPATAAHQDESGVRINDSIVSDHTSQ---EPLTIFGPETAAGDGEPVDDPSPFPSRAQ 282
           I  P T  +Q  S    N  +    TS    +PLT F   ++ G  +P+   S   S AQ
Sbjct: 104 INQPLTGFNQPSSTGLNNPILGQPSTSSSLNQPLTGFNQPSSTGFNQPISSSSSSSSSAQ 163

Query: 283 RTPRNSRTSLKTL 321
             P  +R +   L
Sbjct: 164 NQPFTNRLNQNNL 176


>At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM
           TIGR01612: reticulocyte binding protein; contains
           TIGRFAM TIGR00864: polycystin cation channel protein;
           similar to fimbriae-associated protein Fap1
           [Streptococcus parasanguinis] (GI:3929312)
          Length = 1498

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
 Frame = +1

Query: 70  ARGSPVRTVDSSQDIEIPATAAHQDESGVRINDS-IVSDHTSQEPLTIFGPETAAGDGEP 246
           A+ SP    D   D+  P       +    IN S  V+DH   EP+T+  P +      P
Sbjct: 253 AKVSPTEPSDGGMDLGQPTVT----DPAETINGSESVNDHVGSEPVTVLEPVSVENGHPP 308

Query: 247 VD 252
           V+
Sbjct: 309 VE 310


>At1g36990.1 68414.m04611 expressed protein contains PS00070:
           Aldehyde dehydrogenases cysteine active site; similar to
           high molecular mass nuclear antigen (GI:2754696) [Gallus
           gallus];similar to streptococcal hemagglutinin
           (GI:8885520) [Streptococcus gordonii] similar to
           proteophosphoglycan (GI:5420389) [Leishmania major]
          Length = 581

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +1

Query: 55  SADSCARGSPVRTVDSSQDIEIPATAAHQDESGVRINDSI-VSDHTS 192
           S+ + A  S    ++SS+D+     ++ Q  SGV + DS+ V+ HTS
Sbjct: 471 SSSTSASSSVEVKLNSSKDLIASDPSSSQATSGVEVTDSVQVASHTS 517


>At4g29790.1 68417.m04242 expressed protein
          Length = 1211

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -3

Query: 275  RDGKGEGSSTGSPSPAAVSGPNIVKGSCEVWSETIESLMRTPL 147
            RDGKG+ SS+   S   +  P +V    E  S+T      TP+
Sbjct: 1070 RDGKGQASSSRGGSTNKIGRPALVNAKGERKSKTKPRQKTTPM 1112


>At1g23540.1 68414.m02960 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 720

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +1

Query: 181 DHTSQEPLTIFGPETAAGDGEPVDDPSPFPSRAQRTP 291
           D T+  P+   GP T+     P   PSPFP+   +TP
Sbjct: 173 DPTNPPPIQPSGPATSP-PANPNAPPSPFPTVPPKTP 208


>At4g33750.1 68417.m04792 expressed protein 
          Length = 148

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 17/80 (21%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
 Frame = +1

Query: 40  FLTGKSADSCARGSPVRTVDSSQDIEIPATAAHQ---DESGVRINDSIVSDHTSQEPLTI 210
           F+  +S +S +  S +  +  S   E+   +  +   DESG + + +I S   ++E    
Sbjct: 47  FIQDESRNSTSESSLLENIAGSNTTEVNENSRSEGDDDESGEKESSNIFSTELTEEADNT 106

Query: 211 FGPETAAGDGEPVDDPSPFP 270
            G   +  + + + DP   P
Sbjct: 107 SGTSISQEEMDALTDPQTLP 126


>At4g22990.1 68417.m03317 SPX (SYG1/Pho81/XPR1) domain-containing
           protein low similarity to SP|P51564 Tetracycline
           resistance protein, class H {Pasteurella multocida},
           SP|P39843 Multidrug resistance protein 2
           (Multidrug-efflux transporter 2) {Bacillus subtilis};
           contains Pfam profile PF03105: SPX domain
          Length = 699

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 24/85 (28%), Positives = 37/85 (43%)
 Frame = +1

Query: 115 EIPATAAHQDESGVRINDSIVSDHTSQEPLTIFGPETAAGDGEPVDDPSPFPSRAQRTPR 294
           EIP T+   + S V+    +  +   ++PL +   E     GE   D S   S   RTP 
Sbjct: 442 EIPKTSEESNHSAVQ---DVNLEKGMKQPLLLTSEEIEE-QGEDECDGSEEASEDSRTPA 497

Query: 295 NSRTSLKTLLLVHKYDMVLMSFLLQ 369
           NS  +   LL       +L+ F+L+
Sbjct: 498 NSILAAYRLLTPSVKVQLLIYFMLK 522


>At3g53210.1 68416.m05863 nodulin MtN21 family protein similar to
           MtN21 [Medicago truncatula] GI:2598575; contains Pfam
           profile PF00892: Integral membrane protein
          Length = 369

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -3

Query: 494 NIAFVVFELSLGGNHMIFVTEYINIGKNKFV 402
           +IA VVF+    GNH+I +   +N+G +K V
Sbjct: 11  HIAMVVFQTGYAGNHVI-MRYALNLGVSKLV 40


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.132    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,452,026
Number of Sequences: 28952
Number of extensions: 227808
Number of successful extensions: 692
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)