BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov12g04 (360 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces po... 26 2.0 SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 25 4.7 SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha... 24 6.2 SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar... 24 6.2 SPAC10F6.16 |mug134||endosulphine family protein|Schizosaccharom... 24 8.2 SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch... 24 8.2 SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces... 24 8.2 >SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces pombe|chr 1|||Manual Length = 230 Score = 25.8 bits (54), Expect = 2.0 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%) Frame = +2 Query: 68 NKLPFCDDQEF*FAGQQHIRC--*CFSTRRD 154 N PFC D + QQH +C C +R+D Sbjct: 148 NSWPFCLDHSYILEDQQHNKCLVHCNQSRKD 178 >SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Schizosaccharomyces pombe|chr 3|||Manual Length = 571 Score = 24.6 bits (51), Expect = 4.7 Identities = 7/15 (46%), Positives = 9/15 (60%) Frame = +3 Query: 6 RFQSVPCKVFHHNHC 50 R +PC + HNHC Sbjct: 50 RIAKIPCGHYFHNHC 64 >SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccharomyces pombe|chr 1|||Manual Length = 200 Score = 24.2 bits (50), Expect = 6.2 Identities = 8/20 (40%), Positives = 13/20 (65%) Frame = +1 Query: 148 ARWRLWRSEHFSLLGGKKGR 207 A +R+W H+ +L G KG+ Sbjct: 107 APFRVWYETHYGILMGSKGK 126 >SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosaccharomyces pombe|chr 1|||Manual Length = 200 Score = 24.2 bits (50), Expect = 6.2 Identities = 8/20 (40%), Positives = 13/20 (65%) Frame = +1 Query: 148 ARWRLWRSEHFSLLGGKKGR 207 A +R+W H+ +L G KG+ Sbjct: 107 APFRVWYETHYGILMGSKGK 126 >SPAC10F6.16 |mug134||endosulphine family protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 139 Score = 23.8 bits (49), Expect = 8.2 Identities = 12/28 (42%), Positives = 15/28 (53%) Frame = +2 Query: 158 GCGGRNISLYLVARKEGSPTARSSRRES 241 G + SL+ E SP+ SSRRES Sbjct: 101 GSPNKEPSLHTKRPSESSPSGASSRRES 128 >SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr 3|||Manual Length = 471 Score = 23.8 bits (49), Expect = 8.2 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%) Frame = -3 Query: 316 KRVHVSIILRTKLF--FRCTMFCYYLRRF 236 K V++IL +++F CTMF Y+ R F Sbjct: 142 KAKSVALILVSRIFTGVACTMFLYHKRYF 170 >SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces pombe|chr 2|||Manual Length = 475 Score = 23.8 bits (49), Expect = 8.2 Identities = 13/31 (41%), Positives = 14/31 (45%) Frame = +3 Query: 18 VPCKVFHHNHCRFSLPQINCHFAMTKNSNSQ 110 V CK F N CR+ NC T SN Q Sbjct: 2 VVCKYFLQNRCRYG---TNCKNQHTVPSNGQ 29 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,465,679 Number of Sequences: 5004 Number of extensions: 25911 Number of successful extensions: 54 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 53 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 54 length of database: 2,362,478 effective HSP length: 65 effective length of database: 2,037,218 effective search space used: 110009772 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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