Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12g03
(699 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ... 147 1e-36
SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch... 52 1e-07
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces... 43 5e-05
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar... 30 0.37
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb... 29 0.64
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 27 2.0
SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces pombe... 27 2.6
SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual 27 2.6
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 26 4.5
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 26 4.5
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S... 25 7.9
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 25 7.9
>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 639
Score = 147 bits (357), Expect = 1e-36
Identities = 73/198 (36%), Positives = 125/198 (63%), Gaps = 6/198 (3%)
Frame = +1
Query: 124 STLRERQLNALKQMLNLNQPLTK------NIANEPTWKILIYDRVGQDIISPLVSVKDLR 285
S+LRE Q+ +L+++LNLNQ + + + +N P WK+LI+D+ G + IS ++ + DLR
Sbjct: 10 SSLREAQIQSLEKLLNLNQDVNELESSPQHASNFPIWKVLIFDKAGSETISSVLRISDLR 69
Query: 286 ELGVTLHLQLHSDRDSIPEVPAVYFCSPSDENLDRICQDLDNGIYDQYHLNFISPITRHK 465
+ GVT+H+ + S R I +VPA+YF P+ EN++ I +DL G+Y+ ++ F S I+R
Sbjct: 70 KHGVTVHMNITSFRQPIADVPAIYFVQPTQENIELIIEDLSKGLYESAYVCFSSTISRAL 129
Query: 466 LEDLAASAIQSNSAVNIHKVFDQYLNFICLEDDLFIMKHQQSDSLSYYAINKADTKDTEM 645
LE A A ++N++ IH+V+DQYLN++ LE D F ++ + ++ + + + +
Sbjct: 130 LEQFAELASKTNTSHMIHQVYDQYLNYVVLESDFFSLQLPK----IFHTFHNPSSDEALI 185
Query: 646 EVIMDNIVESLFSVFVTM 699
+ +IV LFSV VT+
Sbjct: 186 NSRVQDIVNGLFSVIVTL 203
>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
45|Schizosaccharomyces pombe|chr 1|||Manual
Length = 558
Score = 51.6 bits (118), Expect = 1e-07
Identities = 38/148 (25%), Positives = 75/148 (50%), Gaps = 3/148 (2%)
Frame = +1
Query: 163 MLNLNQPLTKNIANEPT-WKILIYDRVGQDIISPLVSVKDLRELGVTLHLQLHSDRDSIP 339
+++ +Q K I E + KIL+ + I+S ++ +L E + L + L + R+ +
Sbjct: 3 LVSASQSYFKRIFQEVSDLKILLLEEDTTKIVSSCITQSNLLEQQIYLTVLLGNKREKLR 62
Query: 340 EVPAVYFCSPSDENLDRICQDLDNGIYDQYHLNFISPITRHKLEDLAASAIQSNSAVNIH 519
+ V F P+ L +C++L + Y +YHL F + I + LE LA +S+ +
Sbjct: 63 HLKCVAFLRPTPTTLRLLCEELRDPKYAEYHLYFTNVIPKSFLERLA----ESDDFEAVK 118
Query: 520 KVFDQYLNFICLEDDL--FIMKHQQSDS 597
+ + +L+++ + +DL F + H DS
Sbjct: 119 SIQEFFLDYLVVNNDLASFNIPHIIEDS 146
>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 693
Score = 42.7 bits (96), Expect = 5e-05
Identities = 40/163 (24%), Positives = 67/163 (41%), Gaps = 1/163 (0%)
Frame = +1
Query: 214 WKILIYDRVGQDIISPLVSVKDLRELGVTLHLQLHSDRDSIPEVPAVYFCSPSDENLDRI 393
WK+LI D DII+ +++ L E + L + R A+Y ++ +D I
Sbjct: 24 WKVLIVDTKTADIINHFITIHSLLEEKIAAVEILENPRTPNSSFEALYILHSEEKLVDCI 83
Query: 394 CQDLD-NGIYDQYHLNFISPITRHKLEDLAASAIQSNSAVNIHKVFDQYLNFICLEDDLF 570
+D + + Y H+ F+ + + L S I S I V YL+F LE F
Sbjct: 84 LKDEEYDKRYPGIHIVFLDMVKEPLINKLRTSRIAS----KIRTVQVAYLDFTSLESRYF 139
Query: 571 IMKHQQSDSLSYYAINKADTKDTEMEVIMDNIVESLFSVFVTM 699
+ S Y+ N A + + + +FSV V++
Sbjct: 140 QVHDSFSGLRLYHPSNAAIIRQE-----LSKVAHGIFSVCVSL 177
>SPAC11E3.11c |||guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 29.9 bits (64), Expect = 0.37
Identities = 27/107 (25%), Positives = 40/107 (37%)
Frame = +1
Query: 370 SDENLDRICQDLDNGIYDQYHLNFISPITRHKLEDLAASAIQSNSAVNIHKVFDQYLNFI 549
S +N + DL + IY+ H N +SP H QS + K
Sbjct: 650 SYQNDRPLATDLPSVIYNHKHPNVVSPFYVHPYIKQGILKFQSKESHKFRKKEVWSTVLA 709
Query: 550 CLEDDLFIMKHQQSDSLSYYAINKADTKDTEMEVIMDNIVESLFSVF 690
L+ D+F + + + +LSY D VI I+ SL F
Sbjct: 710 VLQRDVFTLYNLNTPNLSYDP-KDLDISKVGKPVIKTTIIASLAKPF 755
>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 406
Score = 29.1 bits (62), Expect = 0.64
Identities = 17/62 (27%), Positives = 28/62 (45%)
Frame = +1
Query: 208 PTWKILIYDRVGQDIISPLVSVKDLRELGVTLHLQLHSDRDSIPEVPAVYFCSPSDENLD 387
P + Y +G+ + S + + LR LG T+H L ++ +Y C S E L
Sbjct: 160 PLSSVHAYVEIGEGMFSMEIVTEQLRLLGATVHASLQMTEENPVSHAVLYDC--SQETLK 217
Query: 388 RI 393
+I
Sbjct: 218 KI 219
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 27.5 bits (58), Expect = 2.0
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = +1
Query: 352 VYFCSPSDENLDRICQDLDNGIYDQYHLNFISPITR 459
+ C+PS+ +D I + G+YD + F + R
Sbjct: 1334 ILICAPSNAAIDEILLRIKAGVYDHEGIKFFPKVIR 1369
>SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 460
Score = 27.1 bits (57), Expect = 2.6
Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Frame = +1
Query: 475 LAASAIQSNSAVN-IHKVFDQYLNFICLEDDLFIMKHQQSDSLS---YYAINKADTKDTE 642
L ++I+ SA++ H+ + LN ++++ HQ D ++ Y+ +N D D+E
Sbjct: 303 LQLTSIKDVSALDKAHQDNSEDLNNPFIKNNDKTKFHQNIDWIALEKYFEVNALDISDSE 362
Query: 643 MEVIMDNIVESLFSV 687
E + D + +S FS+
Sbjct: 363 SEDLSDILSDSEFSI 377
>SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 180
Score = 27.1 bits (57), Expect = 2.6
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +2
Query: 302 FIYNYIQIEIRYQKYLLFISVLLLMKIWIAF 394
F Y+Q+++R QKY+ F LL+ + +
Sbjct: 22 FRKTYLQLQVRRQKYMAFYVSLLVWNFYFGY 52
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 26.2 bits (55), Expect = 4.5
Identities = 23/94 (24%), Positives = 40/94 (42%)
Frame = +1
Query: 145 LNALKQMLNLNQPLTKNIANEPTWKILIYDRVGQDIISPLVSVKDLRELGVTLHLQLHSD 324
+NAL + ++N T+N+ + D V QD ++ + +L +T
Sbjct: 1019 VNALSKKDDINVQKTENVDESVGLNAMFMDNVNQDSLNSVDQSSGKDKLLLT-------- 1070
Query: 325 RDSIPEVPAVYFCSPSDENLDRICQDLDNGIYDQ 426
S P P +F ++E L +D D I+DQ
Sbjct: 1071 -SSTPNKPTTFFMPANEEILGSPAKDYD--IHDQ 1101
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 26.2 bits (55), Expect = 4.5
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +1
Query: 418 YDQYHLNFISPI-TRHKLEDLAASAIQSNSAVNIHKVFDQYLNFICLED-DLFIM 576
Y++ LN I + T K+E++ V++ +F +LNFI ++ ++F M
Sbjct: 24 YERKRLNEIGDLLTPQKIEEVLNCKDTKQRNVSLEDIFQDFLNFIITKNQEMFSM 78
>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = -1
Query: 426 LIIDPIIEILANAIQIFIRRRTEINSRYFW 337
+ +DP+ ++ + +Q F + R N RY W
Sbjct: 279 IYLDPVTQLPISNVQAFQQVREVYNQRYSW 308
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 25.4 bits (53), Expect = 7.9
Identities = 19/87 (21%), Positives = 38/87 (43%)
Frame = +1
Query: 406 DNGIYDQYHLNFISPITRHKLEDLAASAIQSNSAVNIHKVFDQYLNFICLEDDLFIMKHQ 585
D+G+ + + L+F+S + + A I S +++ D Y D+ F +K+
Sbjct: 63 DSGVSESWVLDFLSVTGEKTISEFLAQKIWKTSNGDLNVAVDMYF------DESFNIKNS 116
Query: 586 QSDSLSYYAINKADTKDTEMEVIMDNI 666
DS S D T+M+ + + +
Sbjct: 117 NPDSESQ---KDTDASLTQMDQLSNTV 140
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,622,674
Number of Sequences: 5004
Number of extensions: 50703
Number of successful extensions: 125
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -