Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12g03
         (699 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0348 - 23346182-23348022,23348118-23348148                      130   1e-30
02_03_0030 - 14083117-14083166,14083620-14083689,14083777-140838...    42   6e-04
02_03_0084 - 15041261-15041437,15041625-15041765,15042857-150429...    40   0.001
04_03_0037 - 9991176-9991268,9991403-9991474,9991569-9991928,999...    37   0.018
09_04_0088 + 14494711-14494931,14496309-14496399,14496496-144965...    28   8.2  
03_05_0813 - 27894593-27894915,27896164-27896422,27896513-278967...    28   8.2  

>03_05_0348 - 23346182-23348022,23348118-23348148
          Length = 623

 Score =  130 bits (314), Expect = 1e-30
 Identities = 71/201 (35%), Positives = 114/201 (56%), Gaps = 10/201 (4%)
 Frame = +1

Query: 127 TLRERQLNALKQMLNLNQPL----------TKNIANEPTWKILIYDRVGQDIISPLVSVK 276
           TLR++QL+++ +ML+LNQ L            +   E  +KIL+ D     +++P++ V 
Sbjct: 4   TLRKKQLDSIVRMLHLNQQLQGSPDGVGGGVGSAEEEEAYKILVMDSPCVALLAPVLRVG 63

Query: 277 DLRELGVTLHLQLHSDRDSIPEVPAVYFCSPSDENLDRICQDLDNGIYDQYHLNFISPIT 456
           +LR  GVTLHL +   R  +P+ PAVY   P+  N+DR+  D   G+Y  +HLNF + + 
Sbjct: 64  ELRRHGVTLHLNIDKARQQVPDAPAVYLLRPTAANVDRVAADAAAGLYASFHLNFSTCVP 123

Query: 457 RHKLEDLAASAIQSNSAVNIHKVFDQYLNFICLEDDLFIMKHQQSDSLSYYAINKADTKD 636
           R  LE LA++   S SA  + +V DQYL+F+CLE+ LF +   +    +Y A+N     +
Sbjct: 124 RALLERLASATAASRSAHRVARVADQYLDFVCLEEGLFSLAQPR----AYVALNDPAAAE 179

Query: 637 TEMEVIMDNIVESLFSVFVTM 699
            ++  ++D I   LF V  T+
Sbjct: 180 ADITALVDAIALGLFCVVATL 200


>02_03_0030 -
           14083117-14083166,14083620-14083689,14083777-14083857,
           14083940-14084065,14084916-14085143,14085246-14085325,
           14086567-14086768,14086857-14086946
          Length = 308

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 39/167 (23%), Positives = 76/167 (45%), Gaps = 3/167 (1%)
 Frame = +1

Query: 208 PTWKILIYDRVGQDIISPLVSVKDLRELGVTLHLQLH---SDRDSIPEVPAVYFCSPSDE 378
           P  K+L+ D     ++S + S  DL    V L   +    S R+S+  + AVYF  PS +
Sbjct: 19  PGMKVLVLDPDTVGMVSVVYSQSDLLRKEVFLVETVDNASSSRESMAHLKAVYFLRPSSD 78

Query: 379 NLDRICQDLDNGIYDQYHLNFISPITRHKLEDLAASAIQSNSAVNIHKVFDQYLNFICLE 558
           N+ ++ + L    + +YHL F + +   +++ LA     S+    + +V + Y +F  ++
Sbjct: 79  NVQKLRRHLAAPRFAEYHLFFSNVLKIPQIQVLA----DSDEQEVVQQVQEFYADFCAID 134

Query: 559 DDLFIMKHQQSDSLSYYAINKADTKDTEMEVIMDNIVESLFSVFVTM 699
              F +  + +     Y +         M+   D  V+ + SVF+ +
Sbjct: 135 PYHFTLNIRNN---HVYMLPMV-VDPPGMQSFCDRAVDGIASVFLAL 177


>02_03_0084 -
           15041261-15041437,15041625-15041765,15042857-15042946,
           15043111-15043201,15043953-15044155,15045361-15045438,
           15045535-15045651,15046111-15046161,15046405-15046500,
           15046726-15046742,15046938-15047064,15050585-15050681,
           15051565-15051638,15051910-15051993,15052099-15052290,
           15054191-15054319,15055607-15055639,15055747-15055843,
           15055940-15055990,15057494-15057564,15058305-15058455,
           15058625-15058703,15059265-15059346,15060335-15060335,
           15060565-15060620,15060969-15061018,15061511-15061580
          Length = 834

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 22/62 (35%), Positives = 35/62 (56%)
 Frame = +1

Query: 193 NIANEPTWKILIYDRVGQDIISPLVSVKDLRELGVTLHLQLHSDRDSIPEVPAVYFCSPS 372
           NI N+   ++LI D++   IIS    + D+ E GV+L   L+  R  +P + A+YF  P+
Sbjct: 52  NIQNQHG-RVLIMDKLTVKIISCSCKMADITEEGVSLVEDLYKRRQPLPSLDAIYFIQPT 110

Query: 373 DE 378
            E
Sbjct: 111 KE 112


>04_03_0037 -
           9991176-9991268,9991403-9991474,9991569-9991928,
           9992466-9992555,9992692-9992782,9993530-9993729,
           9998024-9998101,9998196-9998312,10000017-10000112,
           10000192-10000317,10000533-10000629,10000979-10001023,
           10002106-10002179,10002267-10002350,10002439-10002522,
           10002660-10002851,10003775-10003903,10004061-10004093,
           10004190-10004286,10004833-10004883,10005211-10005289,
           10005480-10005552,10005595-10005691,10006392-10006473,
           10008345-10008691,10010271-10010535,10010624-10010743,
           10010971-10011358
          Length = 1219

 Score = 36.7 bits (81), Expect = 0.018
 Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
 Frame = +1

Query: 313 LHSDRDSIPEVPAVYFCSPSDENLDRICQDLDNGI--YDQYHLNFISPITRHKLEDLAAS 486
           L+  R  +P + A+YF  P+ EN+     D+   I  Y + ++ F SP+ R   E +A  
Sbjct: 462 LYMRRQPLPLMDAIYFIQPTKENIRIFMSDMSGKIPLYKKAYVFFSSPVQR---ELVAQI 518

Query: 487 AIQSNSAVNIHKVFDQYLNFICLEDDLFIMKHQQS 591
              SN    I  + +  L +  ++   F   H ++
Sbjct: 519 KKDSNVRARIGALSEMNLEYFAIDSQGFTTDHDKA 553


>09_04_0088 +
           14494711-14494931,14496309-14496399,14496496-14496571,
           14496671-14496755,14497381-14497450,14499111-14499316,
           14499434-14499508,14501043-14501133,14501400-14501441,
           14501661-14501741,14502010-14502089,14502254-14502365
          Length = 409

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/48 (27%), Positives = 29/48 (60%)
 Frame = +1

Query: 520 KVFDQYLNFICLEDDLFIMKHQQSDSLSYYAINKADTKDTEMEVIMDN 663
           K+ D Y++F    D+LF+M    S  +++++I++ D+K+ +  +   N
Sbjct: 226 KITDGYISFSSKIDELFMMMQHGSRLIAWWSIDE-DSKEEQAHLCYAN 272


>03_05_0813 -
           27894593-27894915,27896164-27896422,27896513-27896728,
           27896920-27897625,27897895-27898100
          Length = 569

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +1

Query: 400 DLDNGIYDQYHLNFISPITRHKLEDLAASAIQSNSAVNIHKVFDQYLNFICLEDD 564
           +LD     +Y L+FI  +    +  L    ++SNS   I+K    ++NF+ + DD
Sbjct: 373 NLDKLKVHKYRLHFICGVNEC-VSGLEYGPVRSNSPWRIYKYNHSHINFLAICDD 426


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,008,127
Number of Sequences: 37544
Number of extensions: 266285
Number of successful extensions: 591
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)