BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov12g03 (699 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 03_05_0348 - 23346182-23348022,23348118-23348148 130 1e-30 02_03_0030 - 14083117-14083166,14083620-14083689,14083777-140838... 42 6e-04 02_03_0084 - 15041261-15041437,15041625-15041765,15042857-150429... 40 0.001 04_03_0037 - 9991176-9991268,9991403-9991474,9991569-9991928,999... 37 0.018 09_04_0088 + 14494711-14494931,14496309-14496399,14496496-144965... 28 8.2 03_05_0813 - 27894593-27894915,27896164-27896422,27896513-278967... 28 8.2 >03_05_0348 - 23346182-23348022,23348118-23348148 Length = 623 Score = 130 bits (314), Expect = 1e-30 Identities = 71/201 (35%), Positives = 114/201 (56%), Gaps = 10/201 (4%) Frame = +1 Query: 127 TLRERQLNALKQMLNLNQPL----------TKNIANEPTWKILIYDRVGQDIISPLVSVK 276 TLR++QL+++ +ML+LNQ L + E +KIL+ D +++P++ V Sbjct: 4 TLRKKQLDSIVRMLHLNQQLQGSPDGVGGGVGSAEEEEAYKILVMDSPCVALLAPVLRVG 63 Query: 277 DLRELGVTLHLQLHSDRDSIPEVPAVYFCSPSDENLDRICQDLDNGIYDQYHLNFISPIT 456 +LR GVTLHL + R +P+ PAVY P+ N+DR+ D G+Y +HLNF + + Sbjct: 64 ELRRHGVTLHLNIDKARQQVPDAPAVYLLRPTAANVDRVAADAAAGLYASFHLNFSTCVP 123 Query: 457 RHKLEDLAASAIQSNSAVNIHKVFDQYLNFICLEDDLFIMKHQQSDSLSYYAINKADTKD 636 R LE LA++ S SA + +V DQYL+F+CLE+ LF + + +Y A+N + Sbjct: 124 RALLERLASATAASRSAHRVARVADQYLDFVCLEEGLFSLAQPR----AYVALNDPAAAE 179 Query: 637 TEMEVIMDNIVESLFSVFVTM 699 ++ ++D I LF V T+ Sbjct: 180 ADITALVDAIALGLFCVVATL 200 >02_03_0030 - 14083117-14083166,14083620-14083689,14083777-14083857, 14083940-14084065,14084916-14085143,14085246-14085325, 14086567-14086768,14086857-14086946 Length = 308 Score = 41.5 bits (93), Expect = 6e-04 Identities = 39/167 (23%), Positives = 76/167 (45%), Gaps = 3/167 (1%) Frame = +1 Query: 208 PTWKILIYDRVGQDIISPLVSVKDLRELGVTLHLQLH---SDRDSIPEVPAVYFCSPSDE 378 P K+L+ D ++S + S DL V L + S R+S+ + AVYF PS + Sbjct: 19 PGMKVLVLDPDTVGMVSVVYSQSDLLRKEVFLVETVDNASSSRESMAHLKAVYFLRPSSD 78 Query: 379 NLDRICQDLDNGIYDQYHLNFISPITRHKLEDLAASAIQSNSAVNIHKVFDQYLNFICLE 558 N+ ++ + L + +YHL F + + +++ LA S+ + +V + Y +F ++ Sbjct: 79 NVQKLRRHLAAPRFAEYHLFFSNVLKIPQIQVLA----DSDEQEVVQQVQEFYADFCAID 134 Query: 559 DDLFIMKHQQSDSLSYYAINKADTKDTEMEVIMDNIVESLFSVFVTM 699 F + + + Y + M+ D V+ + SVF+ + Sbjct: 135 PYHFTLNIRNN---HVYMLPMV-VDPPGMQSFCDRAVDGIASVFLAL 177 >02_03_0084 - 15041261-15041437,15041625-15041765,15042857-15042946, 15043111-15043201,15043953-15044155,15045361-15045438, 15045535-15045651,15046111-15046161,15046405-15046500, 15046726-15046742,15046938-15047064,15050585-15050681, 15051565-15051638,15051910-15051993,15052099-15052290, 15054191-15054319,15055607-15055639,15055747-15055843, 15055940-15055990,15057494-15057564,15058305-15058455, 15058625-15058703,15059265-15059346,15060335-15060335, 15060565-15060620,15060969-15061018,15061511-15061580 Length = 834 Score = 40.3 bits (90), Expect = 0.001 Identities = 22/62 (35%), Positives = 35/62 (56%) Frame = +1 Query: 193 NIANEPTWKILIYDRVGQDIISPLVSVKDLRELGVTLHLQLHSDRDSIPEVPAVYFCSPS 372 NI N+ ++LI D++ IIS + D+ E GV+L L+ R +P + A+YF P+ Sbjct: 52 NIQNQHG-RVLIMDKLTVKIISCSCKMADITEEGVSLVEDLYKRRQPLPSLDAIYFIQPT 110 Query: 373 DE 378 E Sbjct: 111 KE 112 >04_03_0037 - 9991176-9991268,9991403-9991474,9991569-9991928, 9992466-9992555,9992692-9992782,9993530-9993729, 9998024-9998101,9998196-9998312,10000017-10000112, 10000192-10000317,10000533-10000629,10000979-10001023, 10002106-10002179,10002267-10002350,10002439-10002522, 10002660-10002851,10003775-10003903,10004061-10004093, 10004190-10004286,10004833-10004883,10005211-10005289, 10005480-10005552,10005595-10005691,10006392-10006473, 10008345-10008691,10010271-10010535,10010624-10010743, 10010971-10011358 Length = 1219 Score = 36.7 bits (81), Expect = 0.018 Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 2/95 (2%) Frame = +1 Query: 313 LHSDRDSIPEVPAVYFCSPSDENLDRICQDLDNGI--YDQYHLNFISPITRHKLEDLAAS 486 L+ R +P + A+YF P+ EN+ D+ I Y + ++ F SP+ R E +A Sbjct: 462 LYMRRQPLPLMDAIYFIQPTKENIRIFMSDMSGKIPLYKKAYVFFSSPVQR---ELVAQI 518 Query: 487 AIQSNSAVNIHKVFDQYLNFICLEDDLFIMKHQQS 591 SN I + + L + ++ F H ++ Sbjct: 519 KKDSNVRARIGALSEMNLEYFAIDSQGFTTDHDKA 553 >09_04_0088 + 14494711-14494931,14496309-14496399,14496496-14496571, 14496671-14496755,14497381-14497450,14499111-14499316, 14499434-14499508,14501043-14501133,14501400-14501441, 14501661-14501741,14502010-14502089,14502254-14502365 Length = 409 Score = 27.9 bits (59), Expect = 8.2 Identities = 13/48 (27%), Positives = 29/48 (60%) Frame = +1 Query: 520 KVFDQYLNFICLEDDLFIMKHQQSDSLSYYAINKADTKDTEMEVIMDN 663 K+ D Y++F D+LF+M S +++++I++ D+K+ + + N Sbjct: 226 KITDGYISFSSKIDELFMMMQHGSRLIAWWSIDE-DSKEEQAHLCYAN 272 >03_05_0813 - 27894593-27894915,27896164-27896422,27896513-27896728, 27896920-27897625,27897895-27898100 Length = 569 Score = 27.9 bits (59), Expect = 8.2 Identities = 16/55 (29%), Positives = 28/55 (50%) Frame = +1 Query: 400 DLDNGIYDQYHLNFISPITRHKLEDLAASAIQSNSAVNIHKVFDQYLNFICLEDD 564 +LD +Y L+FI + + L ++SNS I+K ++NF+ + DD Sbjct: 373 NLDKLKVHKYRLHFICGVNEC-VSGLEYGPVRSNSPWRIYKYNHSHINFLAICDD 426 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,008,127 Number of Sequences: 37544 Number of extensions: 266285 Number of successful extensions: 591 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 579 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 590 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1792053856 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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