BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov12g03 (699 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_15986| Best HMM Match : No HMM Matches (HMM E-Value=.) 87 1e-17 SB_29729| Best HMM Match : Ank (HMM E-Value=0.0055) 62 4e-10 SB_4209| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6 SB_28746| Best HMM Match : UPF0193 (HMM E-Value=0.31) 30 1.6 SB_16309| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6 SB_15383| Best HMM Match : Transposase_21 (HMM E-Value=0.53) 28 6.3 >SB_15986| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 54 Score = 87.4 bits (207), Expect = 1e-17 Identities = 37/52 (71%), Positives = 48/52 (92%) Frame = +1 Query: 151 ALKQMLNLNQPLTKNIANEPTWKILIYDRVGQDIISPLVSVKDLRELGVTLH 306 ALK+MLNLN+P+ K++A EP WK+L+YDR GQDIISPL++VK+LR+LGVTLH Sbjct: 2 ALKRMLNLNKPVGKSVAAEPVWKVLVYDRFGQDIISPLLTVKELRDLGVTLH 53 >SB_29729| Best HMM Match : Ank (HMM E-Value=0.0055) Length = 222 Score = 62.1 bits (144), Expect = 4e-10 Identities = 31/51 (60%), Positives = 40/51 (78%) Frame = +1 Query: 184 LTKNIANEPTWKILIYDRVGQDIISPLVSVKDLRELGVTLHLQLHSDRDSI 336 +T +I N+ T +L+YDR GQDIISPL++VK+LR+LGVTLH LHS D I Sbjct: 67 ITFHILNDDTRGVLVYDRFGQDIISPLLTVKELRDLGVTLH--LHSWHDII 115 >SB_4209| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 210 Score = 30.3 bits (65), Expect = 1.6 Identities = 17/55 (30%), Positives = 28/55 (50%) Frame = +1 Query: 340 EVPAVYFCSPSDENLDRICQDLDNGIYDQYHLNFISPITRHKLEDLAASAIQSNS 504 +V A+Y P DE ++ +CQ Y+Q H N + P+ L +L ++ NS Sbjct: 89 DVCALYTNIPQDEGIEVVCQQ-----YEQ-HYNPVLPVPTESLRELMGLILKENS 137 >SB_28746| Best HMM Match : UPF0193 (HMM E-Value=0.31) Length = 927 Score = 30.3 bits (65), Expect = 1.6 Identities = 17/55 (30%), Positives = 28/55 (50%) Frame = +1 Query: 340 EVPAVYFCSPSDENLDRICQDLDNGIYDQYHLNFISPITRHKLEDLAASAIQSNS 504 +V A+Y P DE ++ +CQ Y+Q H N + P+ L +L ++ NS Sbjct: 600 DVCALYTNIPQDEGIEVVCQQ-----YEQ-HYNPVLPVPTESLRELMGLILKENS 648 >SB_16309| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 350 Score = 30.3 bits (65), Expect = 1.6 Identities = 17/55 (30%), Positives = 28/55 (50%) Frame = +1 Query: 340 EVPAVYFCSPSDENLDRICQDLDNGIYDQYHLNFISPITRHKLEDLAASAIQSNS 504 +V A+Y P DE ++ +CQ Y+Q H N + P+ L +L ++ NS Sbjct: 131 DVCALYTNIPQDEGIEVVCQQ-----YEQ-HYNPVLPVPTESLRELMGLILKENS 179 >SB_15383| Best HMM Match : Transposase_21 (HMM E-Value=0.53) Length = 297 Score = 28.3 bits (60), Expect = 6.3 Identities = 16/64 (25%), Positives = 30/64 (46%) Frame = -1 Query: 699 HCHKHREQAFNNVVHDHFHFSVLSISFVYCII*Q*IRLLVLHYKKIIFQTNKVQILIENF 520 HCH E+ +N + ++FH L Y + +L + +++ N+ IL++ F Sbjct: 153 HCHATFEEMQSNFLEENFHARSLQEHLHYLDPMKECEDSLLQHLSMVYGVNRASILLD-F 211 Query: 519 MYID 508 Y D Sbjct: 212 PYFD 215 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,396,925 Number of Sequences: 59808 Number of extensions: 337002 Number of successful extensions: 750 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 675 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 749 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1829596184 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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