Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12g03
         (699 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15986| Best HMM Match : No HMM Matches (HMM E-Value=.)              87   1e-17
SB_29729| Best HMM Match : Ank (HMM E-Value=0.0055)                    62   4e-10
SB_4209| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.6  
SB_28746| Best HMM Match : UPF0193 (HMM E-Value=0.31)                  30   1.6  
SB_16309| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_15383| Best HMM Match : Transposase_21 (HMM E-Value=0.53)           28   6.3  

>SB_15986| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 54

 Score = 87.4 bits (207), Expect = 1e-17
 Identities = 37/52 (71%), Positives = 48/52 (92%)
 Frame = +1

Query: 151 ALKQMLNLNQPLTKNIANEPTWKILIYDRVGQDIISPLVSVKDLRELGVTLH 306
           ALK+MLNLN+P+ K++A EP WK+L+YDR GQDIISPL++VK+LR+LGVTLH
Sbjct: 2   ALKRMLNLNKPVGKSVAAEPVWKVLVYDRFGQDIISPLLTVKELRDLGVTLH 53


>SB_29729| Best HMM Match : Ank (HMM E-Value=0.0055)
          Length = 222

 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 31/51 (60%), Positives = 40/51 (78%)
 Frame = +1

Query: 184 LTKNIANEPTWKILIYDRVGQDIISPLVSVKDLRELGVTLHLQLHSDRDSI 336
           +T +I N+ T  +L+YDR GQDIISPL++VK+LR+LGVTLH  LHS  D I
Sbjct: 67  ITFHILNDDTRGVLVYDRFGQDIISPLLTVKELRDLGVTLH--LHSWHDII 115


>SB_4209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 210

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +1

Query: 340 EVPAVYFCSPSDENLDRICQDLDNGIYDQYHLNFISPITRHKLEDLAASAIQSNS 504
           +V A+Y   P DE ++ +CQ      Y+Q H N + P+    L +L    ++ NS
Sbjct: 89  DVCALYTNIPQDEGIEVVCQQ-----YEQ-HYNPVLPVPTESLRELMGLILKENS 137


>SB_28746| Best HMM Match : UPF0193 (HMM E-Value=0.31)
          Length = 927

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +1

Query: 340 EVPAVYFCSPSDENLDRICQDLDNGIYDQYHLNFISPITRHKLEDLAASAIQSNS 504
           +V A+Y   P DE ++ +CQ      Y+Q H N + P+    L +L    ++ NS
Sbjct: 600 DVCALYTNIPQDEGIEVVCQQ-----YEQ-HYNPVLPVPTESLRELMGLILKENS 648


>SB_16309| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 350

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +1

Query: 340 EVPAVYFCSPSDENLDRICQDLDNGIYDQYHLNFISPITRHKLEDLAASAIQSNS 504
           +V A+Y   P DE ++ +CQ      Y+Q H N + P+    L +L    ++ NS
Sbjct: 131 DVCALYTNIPQDEGIEVVCQQ-----YEQ-HYNPVLPVPTESLRELMGLILKENS 179


>SB_15383| Best HMM Match : Transposase_21 (HMM E-Value=0.53)
          Length = 297

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/64 (25%), Positives = 30/64 (46%)
 Frame = -1

Query: 699 HCHKHREQAFNNVVHDHFHFSVLSISFVYCII*Q*IRLLVLHYKKIIFQTNKVQILIENF 520
           HCH   E+  +N + ++FH   L     Y    +     +L +  +++  N+  IL++ F
Sbjct: 153 HCHATFEEMQSNFLEENFHARSLQEHLHYLDPMKECEDSLLQHLSMVYGVNRASILLD-F 211

Query: 519 MYID 508
            Y D
Sbjct: 212 PYFD 215


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,396,925
Number of Sequences: 59808
Number of extensions: 337002
Number of successful extensions: 750
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)