BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov12g02 (696 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPMIT.10 |atp9||F0-ATPase subunit 9; similar to S. cerevisiae Q0... 42 1e-04 SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 29 0.64 SPCC191.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 27 2.6 SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S... 26 5.9 SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr... 25 7.8 SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces ... 25 7.8 >SPMIT.10 |atp9||F0-ATPase subunit 9; similar to S. cerevisiae Q0130|Schizosaccharomyces pombe|chr mitochondrial|||Manual Length = 74 Score = 41.5 bits (93), Expect = 1e-04 Identities = 19/30 (63%), Positives = 24/30 (80%) Frame = +2 Query: 350 FGSLIIGYARNPSLKQQLFSYAILGFALSE 439 F +LI G +RNPS++ LFS AILGFAL+E Sbjct: 28 FSNLISGTSRNPSVRPHLFSMAILGFALTE 57 >SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 343 Score = 29.1 bits (62), Expect = 0.64 Identities = 13/29 (44%), Positives = 14/29 (48%) Frame = -3 Query: 643 AHCRCNTHQSLHHYEGEVSKHSIPWLSTP 557 A R NT Q Y G HS PW S+P Sbjct: 146 AAVRKNTEQEKMGYRGGYQMHSTPWASSP 174 >SPCC191.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual Length = 138 Score = 27.1 bits (57), Expect = 2.6 Identities = 11/33 (33%), Positives = 18/33 (54%) Frame = -1 Query: 660 LHSXLTRTVGVTHISPCITMRVRFPNIRFHGCP 562 LH T+ + + SP + + RFP++R H P Sbjct: 19 LHQYFTQFFVLRYASPSMHLDWRFPSLRIHSYP 51 >SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|Schizosaccharomyces pombe|chr 1|||Manual Length = 512 Score = 25.8 bits (54), Expect = 5.9 Identities = 10/38 (26%), Positives = 17/38 (44%) Frame = +1 Query: 97 NAVCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTC 210 + VC R C ++ + L + +C + DGTC Sbjct: 417 SGVCTSASRQCKKLTNFSSLSCHSDSCKVSCQNEDGTC 454 >SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 553 Score = 25.4 bits (53), Expect = 7.8 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%) Frame = -3 Query: 661 IAFLXDAHCRCNTHQSLHHYEGEVSK--HSIPW 569 I FL DA C +L + EGE K ++ PW Sbjct: 470 IKFLDDAKCETEDSTNLTNREGEAEKTLNTQPW 502 >SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces pombe|chr 3|||Manual Length = 180 Score = 25.4 bits (53), Expect = 7.8 Identities = 11/22 (50%), Positives = 11/22 (50%) Frame = +3 Query: 171 HLQQYPPIHRWYLLSLHSSLQC 236 HL Y P WYL SLH C Sbjct: 63 HLTIYEPQLTWYLSSLHRITGC 84 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,812,736 Number of Sequences: 5004 Number of extensions: 56254 Number of successful extensions: 155 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 150 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 155 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 321151040 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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