Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12g01
(681 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 38 0.002
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 36 0.007
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 33 0.038
SPCC2H8.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 29 0.82
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 28 1.4
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 27 3.3
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 26 5.8
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 26 5.8
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar... 26 5.8
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 26 5.8
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 7.7
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 37.5 bits (83), Expect = 0.002
Identities = 29/130 (22%), Positives = 56/130 (43%), Gaps = 5/130 (3%)
Frame = +2
Query: 239 CLECCKYYVAPETASCGHSLCHLC----WKKRRTCPICATLLERRSAKLNRPLHTLTEHV 406
CL C +Y+ AP SC H+ C C ++ CP C + + N L + E
Sbjct: 29 CLICHEYFRAPLITSCSHTFCSFCIRDYLREHPMCPACRAPEQESRLRKNTILEEILESF 88
Query: 407 QNL-GNAFEKLFKTKLDEFTLETPKQPGFINDPIDNVKEWLASSQNQFTNSALNSGQSSQ 583
+ + FE L + + L+ P + D +EW + + +++ + ++S+
Sbjct: 89 KVIRPTLFEFLKVENVPKPVLQAP-ETVIAQDSASGDEEWEDDLASNSSPASI-AKKTSR 146
Query: 584 DTVKIVNKEL 613
D+ K ++L
Sbjct: 147 DSKKRKREDL 156
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 35.5 bits (78), Expect = 0.007
Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 7/88 (7%)
Frame = +2
Query: 194 NLLSQLVTEQIDQVTCLECCKYYVAPETASCGHSLCHLC---WKKRRT-CPICATLLERR 361
NL +V + C+ C +CGH C C W K + CP+C T L +
Sbjct: 1077 NLYEHIVLKAESHQICIICRDIIKQGFITTCGHLYCSFCLEAWLKHSSSCPMCKTKLNKN 1136
Query: 362 SAKL---NRPLHTLTEHVQNLGNAFEKL 436
+A +R +++ E V E+L
Sbjct: 1137 NAYYIGESRDIYSRQEFVTGFNKRDERL 1164
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 33.1 bits (72), Expect = 0.038
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Frame = +2
Query: 239 CLECCKYYVAPETASCGHSLCHLC----WKKRRTCPIC 340
CL C K Y +P +CGH C C ++K TC C
Sbjct: 254 CLICKKDYRSPIATTCGHHFCEQCAITRYRKTPTCIQC 291
>SPCC2H8.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 266
Score = 28.7 bits (61), Expect = 0.82
Identities = 21/85 (24%), Positives = 35/85 (41%)
Frame = +2
Query: 368 KLNRPLHTLTEHVQNLGNAFEKLFKTKLDEFTLETPKQPGFINDPIDNVKEWLASSQNQF 547
KL++ + T H QN+GNA++ K + ET K P N++ + S ++
Sbjct: 39 KLSKIVKARTRHYQNVGNAYKAEALLKDAKKQCETLKSALNGKLPEVNIESHMLSKYRKY 98
Query: 548 TNSALNSGQSSQDTVKIVNKELSAN 622
N G K+L +N
Sbjct: 99 LNEGGKQGDVGITKPHTKTKKLKSN 123
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 27.9 bits (59), Expect = 1.4
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +3
Query: 504 LIMSKSGLPVLKTSSQIQL*TQDNHHKTQSRLLIKNCPQMNFKFILKSYC 653
LIM +SG +L L DN H T+ RL++ + + F + YC
Sbjct: 164 LIMKESGYDLLACIVSSSLVLFDNAHVTEGRLILLDATLL-FSMVCAIYC 212
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 26.6 bits (56), Expect = 3.3
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 371 LNRPLHTLTEHVQNLGNAFEKLFKTKLDEFTLET 472
LN T T H+ ++ NA FK +LD F ET
Sbjct: 508 LNNDCFTNTSHLYDVLNAQRISFKRQLDSFAEET 541
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 25.8 bits (54), Expect = 5.8
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 497 DPIDNVKEWLASSQNQFTNSALNSGQSSQDTVKIVNKE 610
+ +DNVKEWL S F LN ++ +K VN++
Sbjct: 884 EQLDNVKEWLDSCDICFYEGPLNLNWTT--IMKTVNED 919
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 25.8 bits (54), Expect = 5.8
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +2
Query: 347 LLERRSAKL-NRPLHTLTEHVQNLGNAFEKLFKTKLDEFTLETPKQPGFINDPIDNVKEW 523
+LER KL P+H + V L N F+++ L P++ +NDP++ K W
Sbjct: 1293 ILERYGLKLVEAPIHEIAA-VGEL-NPFDQVSIISLALDPPPIPERAPLVNDPVNYSKNW 1350
>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 205
Score = 25.8 bits (54), Expect = 5.8
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 9/46 (19%)
Frame = +2
Query: 227 DQVTCLECCKYYVAPE-----TASCGHSLCHLCWKKRR----TCPI 337
+ + C +C V+ E A CGH C C K+ R CP+
Sbjct: 143 NNIACAKCGNELVSDEKKSIFAAKCGHLFCSTCAKELRKKTVPCPV 188
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 25.8 bits (54), Expect = 5.8
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 6/46 (13%)
Frame = +2
Query: 227 DQVTCLECCKYYVAPETASCGHSLCHLC------WKKRRTCPICAT 346
D+ C C + C H +CH+C K + C C T
Sbjct: 77 DEQICFICAEGITYSCVLPCNHRMCHVCALRLRALYKTKECTFCKT 122
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.4 bits (53), Expect = 7.7
Identities = 18/59 (30%), Positives = 24/59 (40%)
Frame = -1
Query: 678 RNHY*TIFHSMTLV*T*NSFADNSLLTILTVSCDDCPEFKAEFVNWF*ELASHSLTLSI 502
R H F + L + +N L TIL C P + A+ V F EL+ T I
Sbjct: 1021 RKHLSRAFRNRFLEIHFDDIPENELETILHKRCKIAPSYAAKIVQVFRELSLRRQTTRI 1079
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,750,496
Number of Sequences: 5004
Number of extensions: 56339
Number of successful extensions: 155
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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