Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12g01
(681 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43903| Best HMM Match : FHA (HMM E-Value=4.6e-13) 48 9e-06
SB_44019| Best HMM Match : TPR_2 (HMM E-Value=4.9e-12) 41 0.001
SB_20056| Best HMM Match : zf-C3HC4 (HMM E-Value=9e-11) 40 0.002
SB_8223| Best HMM Match : RVT_1 (HMM E-Value=4e-27) 35 0.070
SB_35560| Best HMM Match : zf-B_box (HMM E-Value=1e-20) 33 0.16
SB_5620| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.16
SB_37786| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.28
SB_50665| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.28
SB_38753| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.28
SB_38368| Best HMM Match : zf-C3HC4 (HMM E-Value=4.4e-15) 33 0.28
SB_23299| Best HMM Match : zf-C3HC4 (HMM E-Value=5.9e-06) 33 0.28
SB_22842| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.28
SB_11979| Best HMM Match : zf-C3HC4 (HMM E-Value=0.061) 33 0.28
SB_57521| Best HMM Match : rve (HMM E-Value=0.13) 32 0.37
SB_47830| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.37
SB_4090| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.49
SB_49488| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.65
SB_46701| Best HMM Match : zf-B_box (HMM E-Value=1.4e-17) 31 0.65
SB_21628| Best HMM Match : zf-B_box (HMM E-Value=1.4e-17) 31 0.65
SB_6628| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-09) 31 0.65
SB_944| Best HMM Match : zf-B_box (HMM E-Value=6.7e-15) 31 0.65
SB_51226| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-09) 31 0.65
SB_47995| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-09) 31 0.65
SB_43880| Best HMM Match : zf-B_box (HMM E-Value=5.1e-15) 31 0.65
SB_43575| Best HMM Match : Sina (HMM E-Value=0) 31 0.65
SB_39287| Best HMM Match : NHL (HMM E-Value=1.5e-21) 31 0.65
SB_57762| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.86
SB_28248| Best HMM Match : zf-C3HC4 (HMM E-Value=4e-10) 31 0.86
SB_18515| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.86
SB_53640| Best HMM Match : zf-C3HC4 (HMM E-Value=4e-10) 31 0.86
SB_41431| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.86
SB_22421| Best HMM Match : zf-B_box (HMM E-Value=4e-17) 31 0.86
SB_18762| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.86
SB_11572| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.86
SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09) 31 1.1
SB_2107| Best HMM Match : zf-B_box (HMM E-Value=3.9e-08) 31 1.1
SB_33464| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0019) 31 1.1
SB_33309| Best HMM Match : zf-C2H2 (HMM E-Value=0) 31 1.1
SB_29221| Best HMM Match : zf-C3HC4 (HMM E-Value=7.5e-10) 31 1.1
SB_19444| Best HMM Match : zf-C3HC4 (HMM E-Value=0.011) 31 1.1
SB_3552| Best HMM Match : PH (HMM E-Value=0.15) 31 1.1
SB_54221| Best HMM Match : zf-B_box (HMM E-Value=2.1e-17) 30 1.5
SB_37560| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_29995| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-05) 30 1.5
SB_22201| Best HMM Match : zf-C3HC4 (HMM E-Value=8.1e-10) 30 1.5
SB_48704| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_27080| Best HMM Match : zf-C3HC4 (HMM E-Value=8.1e-10) 30 1.5
SB_59028| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-05) 30 2.0
SB_39361| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_22726| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_4835| Best HMM Match : WWE (HMM E-Value=3.7e-19) 30 2.0
SB_53950| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_20851| Best HMM Match : Cbl_N3 (HMM E-Value=0) 29 2.6
SB_14207| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0048) 29 2.6
SB_51713| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_8394| Best HMM Match : zf-C3HC4 (HMM E-Value=8.6e-08) 29 2.6
SB_6802| Best HMM Match : zf-B_box (HMM E-Value=5e-18) 29 2.6
SB_40057| Best HMM Match : zf-B_box (HMM E-Value=1.4e-08) 29 3.5
SB_37011| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_26592| Best HMM Match : zf-B_box (HMM E-Value=1.3e-18) 29 3.5
SB_25653| Best HMM Match : U-box (HMM E-Value=0.0064) 29 3.5
SB_23234| Best HMM Match : U-box (HMM E-Value=0.0064) 29 3.5
SB_13725| Best HMM Match : zf-B_box (HMM E-Value=6e-14) 29 3.5
SB_48253| Best HMM Match : zf-C3HC4 (HMM E-Value=0.12) 29 3.5
SB_14351| Best HMM Match : zf-B_box (HMM E-Value=2.3e-12) 29 3.5
SB_4488| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_52669| Best HMM Match : zf-C3HC4 (HMM E-Value=0.05) 29 4.6
SB_32622| Best HMM Match : Ank (HMM E-Value=2.2e-05) 29 4.6
SB_3354| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_48027| Best HMM Match : zf-C3HC4 (HMM E-Value=4e-10) 29 4.6
SB_40632| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14) 29 4.6
SB_9266| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_8285| Best HMM Match : Filamin (HMM E-Value=1.1e-09) 29 4.6
SB_36107| Best HMM Match : zf-CCHC (HMM E-Value=0.00023) 28 6.1
SB_39617| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38) 28 6.1
SB_23788| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38) 28 6.1
SB_9257| Best HMM Match : RVT_1 (HMM E-Value=9.1e-32) 28 6.1
SB_36597| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07) 28 8.0
SB_2351| Best HMM Match : zf-C3HC4 (HMM E-Value=4e-07) 28 8.0
SB_33568| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_6367| Best HMM Match : Seryl_tRNA_N (HMM E-Value=0.84) 28 8.0
>SB_43903| Best HMM Match : FHA (HMM E-Value=4.6e-13)
Length = 553
Score = 47.6 bits (108), Expect = 9e-06
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 4/123 (3%)
Frame = +2
Query: 209 LVTEQIDQVTCLECCKYYVAPETASCGHSLCHLC---W-KKRRTCPICATLLERRSAKLN 376
+V E D+ +C+ C + ++ T +C HS C C W +KR TCPIC R A +
Sbjct: 361 VVEEMEDEFSCIVCQELFIRATTLTCSHSFCEYCLQSWLRKRNTCPIC------RCAVQS 414
Query: 377 RPLHTLTEHVQNLGNAFEKLFKTKLDEFTLETPKQPGFINDPIDNVKEWLASSQNQFTNS 556
+P+ ++ L NA K+ + +D + E ++ + + + +E SS +Q T
Sbjct: 415 QPVRSIV-----LDNAIAKMVDS-MDVASKE--RRRAVMEERAEKSRELAQSSGSQRTPI 466
Query: 557 ALN 565
LN
Sbjct: 467 VLN 469
>SB_44019| Best HMM Match : TPR_2 (HMM E-Value=4.9e-12)
Length = 654
Score = 40.7 bits (91), Expect = 0.001
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = +2
Query: 224 IDQVTCLECCKYYVAPETASCGHSLCHLCWKK----RRTCPICATLL 352
+++ C CC+ + P T CGH C C + R CPIC + L
Sbjct: 374 VEEFECTLCCRLFYNPVTTPCGHVFCRACLNRSLDHRPGCPICRSSL 420
Score = 35.1 bits (77), Expect = 0.053
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 233 VTCLECCKYYVAPETASCGHSLCHLCWKK 319
++C+ CC + P T CGH++C C K
Sbjct: 99 LSCVRCCGILLGPCTLPCGHTVCEKCLSK 127
>SB_20056| Best HMM Match : zf-C3HC4 (HMM E-Value=9e-11)
Length = 471
Score = 39.5 bits (88), Expect = 0.002
Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 9/60 (15%)
Frame = +2
Query: 215 TEQIDQVTCLECCKYYVAPETASCGHSLCHLCWKK----RRTCPICAT-----LLERRSA 367
TEQ+D C C + P T+ CGHS C C + R CP C L ERR A
Sbjct: 322 TEQLDDFECKLCFNLLLEPVTSLCGHSFCRDCLYRSLDHRVECPCCRAPLTKILAERRQA 381
Score = 32.7 bits (71), Expect = 0.28
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Frame = +2
Query: 239 CLECCKYYVAPETASCGHSLCHLCWKKR---RTCPICATLLERRSAKLN 376
C C +YV P T CGH+ C C K + C C + S +N
Sbjct: 22 CGLCGDFYVDPVTILCGHTYCLACIKDEFTGKNCKKCGFKITEESNSVN 70
>SB_8223| Best HMM Match : RVT_1 (HMM E-Value=4e-27)
Length = 1307
Score = 34.7 bits (76), Expect = 0.070
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +2
Query: 218 EQIDQVTCLECCKYYVAPETASCGHSLCHLCWKKRRTCPICATLLERR--SAKLNRPLHT 391
EQ Q C+ CCK A +++C +C K+ IC + + R+ +A +P H
Sbjct: 110 EQTPQ-KCMSCCKNTHARRDCKFYNAICRICNKRGHISDICMSSINRKKSTASKTKPTHC 168
Query: 392 LTEHV 406
+ + +
Sbjct: 169 VEQEI 173
>SB_35560| Best HMM Match : zf-B_box (HMM E-Value=1e-20)
Length = 470
Score = 33.5 bits (73), Expect = 0.16
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 13/69 (18%)
Frame = +2
Query: 227 DQVTCLECCKYYVAPETASCGHSLCHLC--------WKKRRTCPIC-----ATLLERRSA 367
D+VTC C +++ P C H+ C C K + CP+C + + S
Sbjct: 11 DEVTCAICIEHFTDPRLLPCLHTFCRHCLEDLAEHSGKGKLVCPLCKVEYEIAVADIPSL 70
Query: 368 KLNRPLHTL 394
K+N P++ L
Sbjct: 71 KVNFPINNL 79
>SB_5620| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 937
Score = 33.5 bits (73), Expect = 0.16
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 221 QIDQVTCLECCKYYVAPETASCGHSLCHLC 310
Q+D++ C C + P+T SC H LC C
Sbjct: 15 QLDELLCPICLDEFKEPKTLSCMHDLCRKC 44
>SB_37786| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 434
Score = 32.7 bits (71), Expect = 0.28
Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 7/49 (14%)
Frame = +2
Query: 227 DQVTCLECCKYYVAPETASCGHSLCHLCWK-------KRRTCPICATLL 352
++ C C P ++ C HS C CWK K CPIC L
Sbjct: 168 EEFHCAICLDVLEKPLSSKCQHSCCSDCWKSAFELGGKHPACPICQETL 216
>SB_50665| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 625
Score = 32.7 bits (71), Expect = 0.28
Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 7/49 (14%)
Frame = +2
Query: 227 DQVTCLECCKYYVAPETASCGHSLCHLCWK-------KRRTCPICATLL 352
++ C C P ++ C HS C CWK K CPIC L
Sbjct: 164 EEFHCAICLDVLEKPLSSKCQHSCCSDCWKSAFELGEKHPACPICQETL 212
>SB_38753| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 32.7 bits (71), Expect = 0.28
Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 7/49 (14%)
Frame = +2
Query: 227 DQVTCLECCKYYVAPETASCGHSLCHLCWK-------KRRTCPICATLL 352
++ C C P ++ C HS C CWK K CPIC L
Sbjct: 72 EEFHCAICLDVLEKPLSSKCQHSCCSDCWKSAFELGEKHPACPICQETL 120
>SB_38368| Best HMM Match : zf-C3HC4 (HMM E-Value=4.4e-15)
Length = 846
Score = 32.7 bits (71), Expect = 0.28
Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 7/49 (14%)
Frame = +2
Query: 227 DQVTCLECCKYYVAPETASCGHSLCHLCWK-------KRRTCPICATLL 352
++ C C P ++ C HS C CWK K CPIC L
Sbjct: 312 EEFHCAICLDVLEKPLSSKCQHSCCSDCWKSAFELGEKHPACPICQETL 360
Score = 32.7 bits (71), Expect = 0.28
Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 7/49 (14%)
Frame = +2
Query: 227 DQVTCLECCKYYVAPETASCGHSLCHLCWK-------KRRTCPICATLL 352
++ C C P ++ C HS C CWK K CPIC L
Sbjct: 638 EEFHCAICLDVLEKPLSSKCQHSCCSDCWKSAFELGEKHPACPICQETL 686
>SB_23299| Best HMM Match : zf-C3HC4 (HMM E-Value=5.9e-06)
Length = 418
Score = 32.7 bits (71), Expect = 0.28
Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 7/49 (14%)
Frame = +2
Query: 227 DQVTCLECCKYYVAPETASCGHSLCHLCWK-------KRRTCPICATLL 352
++ C C P ++ C HS C CWK K CPIC L
Sbjct: 170 EEFHCAICLDVLEKPLSSKCQHSCCSDCWKSAFELGEKHPACPICQETL 218
>SB_22842| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 757
Score = 32.7 bits (71), Expect = 0.28
Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 7/49 (14%)
Frame = +2
Query: 227 DQVTCLECCKYYVAPETASCGHSLCHLCWK-------KRRTCPICATLL 352
++ C C P ++ C HS C CWK K CPIC L
Sbjct: 315 EEFHCAICLDVLEKPLSSKCQHSCCSDCWKSAFELGEKHPACPICQETL 363
>SB_11979| Best HMM Match : zf-C3HC4 (HMM E-Value=0.061)
Length = 63
Score = 32.7 bits (71), Expect = 0.28
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Frame = +2
Query: 227 DQVTCLECCKYYVAPETA-SCGHSLCHLCWKK----RRTCPIC 340
++V CL C + Y P + SC H C CW + ++ CP C
Sbjct: 7 EKVKCLICMEPYTVPLVSISCWHVHCEECWLRTLGAKKLCPQC 49
>SB_57521| Best HMM Match : rve (HMM E-Value=0.13)
Length = 1105
Score = 32.3 bits (70), Expect = 0.37
Identities = 23/95 (24%), Positives = 40/95 (42%)
Frame = +2
Query: 263 VAPETASCGHSLCHLCWKKRRTCPICATLLERRSAKLNRPLHTLTEHVQNLGNAFEKLFK 442
V T+ C + L KK R C ++ RS +N+ ++ + L KL
Sbjct: 454 VTDPTSWCSNELIRETPKKFRVC------IDPRSQTVNKAINRPIHQMPTLNEQLHKLSS 507
Query: 443 TKLDEFTLETPKQPGFINDPIDNVKEWLASSQNQF 547
+ F+L K+ GF++ P+D WL + +
Sbjct: 508 ARC--FSLVDVKE-GFLHTPLDEESSWLTTMHTSY 539
>SB_47830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 767
Score = 32.3 bits (70), Expect = 0.37
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 224 IDQVTCLECCKYYVAPETASCGHSLCHLCWKK-RRTCPIC 340
I+++TC C +Y P+ C H+ C C KK +R +C
Sbjct: 13 IERLTCSACKGFYKNPKRLPCLHAFCCHCLKKTQRGTKLC 52
>SB_4090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2342
Score = 31.9 bits (69), Expect = 0.49
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 9/47 (19%)
Frame = +2
Query: 227 DQVTCLECCKYYVAPETASCGHSLCHLC---------WKKRRTCPIC 340
D+VTC C +++ P C HS C C K + CP+C
Sbjct: 11 DEVTCSLCIEHFNDPRVLPCFHSFCRHCLEELAVHSEGKGKLVCPLC 57
>SB_49488| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1228
Score = 31.5 bits (68), Expect = 0.65
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = +2
Query: 218 EQIDQVTCLECCKYYVAPETASCGHSLCHLCWKKRRTCPICATLLERRSA--KLNRPLHT 391
EQI Q C+ C K A +++C +C K+ IC + R+ + N+P H
Sbjct: 656 EQIPQ-KCMSCGKNTHARRDCKFYNAICRICNKRGHISDICMSSTNRKKSTPSKNKPTHC 714
Query: 392 LTEHV 406
+ + +
Sbjct: 715 VEQEI 719
>SB_46701| Best HMM Match : zf-B_box (HMM E-Value=1.4e-17)
Length = 442
Score = 31.5 bits (68), Expect = 0.65
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 227 DQVTCLECCKYYVAPETASCGHSLCHLC 310
D+VTC C +++ P C HS C C
Sbjct: 11 DEVTCSICIEHFNDPRVLPCFHSFCRHC 38
>SB_21628| Best HMM Match : zf-B_box (HMM E-Value=1.4e-17)
Length = 291
Score = 31.5 bits (68), Expect = 0.65
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 227 DQVTCLECCKYYVAPETASCGHSLCHLC 310
D+VTC C +++ P C HS C C
Sbjct: 11 DEVTCSICIEHFNDPRVLPCFHSFCRHC 38
>SB_6628| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-09)
Length = 89
Score = 31.5 bits (68), Expect = 0.65
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 227 DQVTCLECCKYYVAPETASCGHSLCHLC 310
D+VTC C +++ P C HS C C
Sbjct: 11 DEVTCSICIEHFNDPRVLPCFHSFCRHC 38
>SB_944| Best HMM Match : zf-B_box (HMM E-Value=6.7e-15)
Length = 629
Score = 31.5 bits (68), Expect = 0.65
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 9/47 (19%)
Frame = +2
Query: 227 DQVTCLECCKYYVAPETASCGHSLCHLC---------WKKRRTCPIC 340
D+VTC C +++ P C HS C C K + CP+C
Sbjct: 131 DEVTCSLCIEHFNDPRVLPCLHSFCRHCLEELAVHSEGKGKLVCPLC 177
>SB_51226| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-09)
Length = 82
Score = 31.5 bits (68), Expect = 0.65
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 227 DQVTCLECCKYYVAPETASCGHSLCHLC 310
D+VTC C +++ P C HS C C
Sbjct: 11 DEVTCSICIEHFNDPRVLPCFHSFCRHC 38
>SB_47995| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-09)
Length = 745
Score = 31.5 bits (68), Expect = 0.65
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 227 DQVTCLECCKYYVAPETASCGHSLCHLC 310
D+VTC C +++ P C HS C C
Sbjct: 11 DEVTCSICIEHFNDPRVLPCFHSFCRHC 38
>SB_43880| Best HMM Match : zf-B_box (HMM E-Value=5.1e-15)
Length = 405
Score = 31.5 bits (68), Expect = 0.65
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 227 DQVTCLECCKYYVAPETASCGHSLCHLC 310
D+VTC C +++ P C HS C C
Sbjct: 10 DEVTCSICIEHFNDPRVLPCFHSFCRHC 37
>SB_43575| Best HMM Match : Sina (HMM E-Value=0)
Length = 432
Score = 31.5 bits (68), Expect = 0.65
Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Frame = +2
Query: 191 INLLSQLVTEQIDQVTCLEC--CKYYVAPETASC--GHSLCHLCWKKRRTCPIC 340
I ++ Q D + EC C YV P C GH +C C K CP C
Sbjct: 18 IGVIPQHGPTNADLTSIFECPVCFDYVLPPILQCSSGHLVCSNCRPKLTCCPTC 71
>SB_39287| Best HMM Match : NHL (HMM E-Value=1.5e-21)
Length = 645
Score = 31.5 bits (68), Expect = 0.65
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 8/59 (13%)
Frame = +2
Query: 194 NLLSQLVTEQI-DQVTCLECCKYYVAPETASCGHSLCHLCWKKRR-------TCPICAT 346
++ SQ E++ +++TC C + + P+ C H+ C C +K + CP C T
Sbjct: 6 SISSQSSIEKVREELTCSVCLEQFREPKMLPCFHTFCKECLEKTKQSFRGNLLCPTCRT 64
>SB_57762| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 639
Score = 31.1 bits (67), Expect = 0.86
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 227 DQVTCLECCKYYVAPETASCGHSLCHLC 310
D+VTC C +++ P C HS C C
Sbjct: 11 DEVTCSLCIEHFNDPRVLPCLHSFCRHC 38
>SB_28248| Best HMM Match : zf-C3HC4 (HMM E-Value=4e-10)
Length = 119
Score = 31.1 bits (67), Expect = 0.86
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 227 DQVTCLECCKYYVAPETASCGHSLCHLC 310
D+VTC C +++ P C HS C C
Sbjct: 11 DEVTCSICIEHFNDPRVLPCLHSFCRHC 38
>SB_18515| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 391
Score = 31.1 bits (67), Expect = 0.86
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 227 DQVTCLECCKYYVAPETASCGHSLCHLC 310
D+VTC C +++ P C HS C C
Sbjct: 11 DEVTCSLCIEHFNDPRVLPCLHSFCRHC 38
>SB_53640| Best HMM Match : zf-C3HC4 (HMM E-Value=4e-10)
Length = 62
Score = 31.1 bits (67), Expect = 0.86
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 227 DQVTCLECCKYYVAPETASCGHSLCHLC 310
D+VTC C +++ P C HS C C
Sbjct: 11 DEVTCSICIEHFNDPRVLPCLHSFCRHC 38
>SB_41431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 667
Score = 31.1 bits (67), Expect = 0.86
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 227 DQVTCLECCKYYVAPETASCGHSLCHLC 310
D+VTC C +++ P C HS C C
Sbjct: 16 DEVTCSICIEHFDDPRVLPCLHSFCRHC 43
>SB_22421| Best HMM Match : zf-B_box (HMM E-Value=4e-17)
Length = 463
Score = 31.1 bits (67), Expect = 0.86
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 227 DQVTCLECCKYYVAPETASCGHSLCHLC 310
D+VTC C +++ P C HS C C
Sbjct: 11 DEVTCSICIEHFNDPRVLPCLHSFCRHC 38
>SB_18762| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 261
Score = 31.1 bits (67), Expect = 0.86
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 7/49 (14%)
Frame = +2
Query: 227 DQVTCLECCKYYVAPETASCGHSLCHLCW-------KKRRTCPICATLL 352
++ C C P ++ C HS C CW +K CPIC L
Sbjct: 21 EEFHCAICLDVLEKPLSSKCQHSCCSDCWESAFDLGEKHPACPICQETL 69
>SB_11572| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 888
Score = 31.1 bits (67), Expect = 0.86
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 227 DQVTCLECCKYYVAPETASCGHSLCHLC 310
D+VTC C +++ P C HS C C
Sbjct: 10 DEVTCSICIEHFNDPRVLPCLHSFCRHC 37
>SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09)
Length = 474
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
Frame = +2
Query: 227 DQVTCLECCKYYVAPETASCGHSLC-HLCWKKRRTCPICATLLE-RRSAKLNRPLHTLTE 400
+ +TC C V CGH C C CP+C T + + + P TL E
Sbjct: 402 NDLTCQICMDAEVNTAFCPCGHVYCCQTCASNLYYCPLCKTFITFVQRIHVQFPCETLEE 461
Query: 401 H-VQNLGNA 424
N GNA
Sbjct: 462 ESFGNPGNA 470
>SB_2107| Best HMM Match : zf-B_box (HMM E-Value=3.9e-08)
Length = 599
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = +2
Query: 203 SQLVTEQIDQVTCLECCKYYVAPETASCGHSLCHLC 310
S+ + VTC C + Y P +C H+ C C
Sbjct: 14 SETTPNNVSDVTCSLCLEQYQDPRVLACLHTYCRHC 49
>SB_33464| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0019)
Length = 413
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Frame = +2
Query: 227 DQVTCLECCKYYVAPETAS-CGHSLCHLCWKKRR------TCPICATLLERRSAKLNRPL 385
+++ C C + + P+ C H++C C KK + CPIC R+ K+ P
Sbjct: 18 EEICCPICTEIFETPKCLPVCAHNVCLSCLKKMKIEQGFIKCPIC-----RKKTKITNPA 72
Query: 386 HTL 394
+L
Sbjct: 73 ESL 75
>SB_33309| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 646
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 227 DQVTCLECCKYYVAPETASCGHSLCHLCWKKRRTCPIC 340
D++ C C + P+T + GH + C R CPIC
Sbjct: 330 DELKCKLCQQQCATPKTLT-GHIVSEHCENSSRVCPIC 366
>SB_29221| Best HMM Match : zf-C3HC4 (HMM E-Value=7.5e-10)
Length = 337
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 5/46 (10%)
Frame = +2
Query: 218 EQIDQVTCLECCKYYVAPETASCGHSLCHLCW-----KKRRTCPIC 340
+ I+ TC C + V P C H C +C+ + CP+C
Sbjct: 30 KDIEDFTCPICLQLLVEPVVLPCEHEFCKMCFTQNVQEANLQCPMC 75
>SB_19444| Best HMM Match : zf-C3HC4 (HMM E-Value=0.011)
Length = 434
Score = 30.7 bits (66), Expect = 1.1
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +2
Query: 284 CGHSLCHLCWKKRRTCPIC 340
CGH+ C +C + R CP C
Sbjct: 255 CGHTFCQMCTRDCRKCPDC 273
>SB_3552| Best HMM Match : PH (HMM E-Value=0.15)
Length = 486
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = -2
Query: 332 GKYVFFSNINDIMN-AHKKLFQVQHSTYSIPSK 237
G V++ N++D M+ H K+ ++H+T IP K
Sbjct: 160 GSLVYYPNMHDYMDDVHAKVLNLKHTTVKIPGK 192
>SB_54221| Best HMM Match : zf-B_box (HMM E-Value=2.1e-17)
Length = 455
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 227 DQVTCLECCKYYVAPETASCGHSLCHLC 310
D+VTC C +++ P C HS C C
Sbjct: 11 DEVTCSICIEHFNDPRVLPCFHSFCLHC 38
>SB_37560| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 706
Score = 30.3 bits (65), Expect = 1.5
Identities = 24/95 (25%), Positives = 40/95 (42%)
Frame = +2
Query: 263 VAPETASCGHSLCHLCWKKRRTCPICATLLERRSAKLNRPLHTLTEHVQNLGNAFEKLFK 442
V T+ C + L KK R +C + + +NRP+H + L KL
Sbjct: 531 VTDPTSWCSNELIRETPKKFR---VCIDPSQTVNKAINRPIHQMP----TLNEQLHKLSS 583
Query: 443 TKLDEFTLETPKQPGFINDPIDNVKEWLASSQNQF 547
+ F+L K+ GF++ P+D WL + +
Sbjct: 584 ARC--FSLVDVKE-GFLHIPLDEESSWLTTMHTSY 615
>SB_29995| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-05)
Length = 362
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 7/60 (11%)
Frame = +2
Query: 227 DQVTCLECCKYYVAPETASCGHSLCHLCWKK-------RRTCPICATLLERRSAKLNRPL 385
++ C C P ++ C HS C CWK CPIC L + + PL
Sbjct: 114 EEFHCAICLDVLGKPLSSKCQHSCCSDCWKSAFELGETHPACPICHETLADPNDLQHAPL 173
>SB_22201| Best HMM Match : zf-C3HC4 (HMM E-Value=8.1e-10)
Length = 604
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +2
Query: 203 SQLVTEQIDQVTCLECCKYYVAPETASCGHSLCHLC 310
S+ + + VTC C + Y P +C H+ C C
Sbjct: 5 SETKPKDVSDVTCSLCLEQYQDPRVLACLHTYCRHC 40
>SB_48704| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1044
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 281 SCGHSLCHLCWKKRRTCPIC-ATLLERRSAKLNRPLHTLTE 400
+CGHS C R+TCPIC LL++ + N L T+
Sbjct: 519 TCGHSFHREC--HRKTCPICLPNLLDKLAVSFNSGLLRSTD 557
>SB_27080| Best HMM Match : zf-C3HC4 (HMM E-Value=8.1e-10)
Length = 462
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +2
Query: 203 SQLVTEQIDQVTCLECCKYYVAPETASCGHSLCHLC 310
S+ + + VTC C + Y P +C H+ C C
Sbjct: 5 SETKPKDVSDVTCSLCLEQYQDPRVLACLHTYCRHC 40
>SB_59028| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-05)
Length = 362
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 7/45 (15%)
Frame = +2
Query: 227 DQVTCLECCKYYVAPETASCGHSLCHLCWKK-------RRTCPIC 340
++ C C P ++ C HS C CWK CPIC
Sbjct: 114 EEFHCAICLDVLGKPLSSKCQHSCCSDCWKSAFELGETHPACPIC 158
>SB_39361| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 397
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = +2
Query: 386 HTLTEHVQNLGNAFEKLFKTKLDEFTLETPKQPGFINDPIDNVKEWLASSQNQFTNSALN 565
HTL + + N + + + + + TL+ G DPID ++++ S FTN L
Sbjct: 119 HTLADIIHNDTSHDDDMLSVQSTDGTLDLGNI-GIWIDPIDGTAQYMSGSHGVFTNGLLA 177
Query: 566 SG 571
G
Sbjct: 178 QG 179
>SB_22726| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 238
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = +2
Query: 218 EQIDQVTCLECCKYYVAPETASCGHSLCHLCWKKRRTCPICATLLERR--SAKLNRPLHT 391
EQ Q C+ C K A +++C +C K+ IC + + R+ +A +P H
Sbjct: 110 EQTPQ-KCMSCGKNTHARRDCKFYNAICRICNKRGHISDICMSSINRKKSTASKTKPTHC 168
Query: 392 LTEHV 406
+ + +
Sbjct: 169 VEQEI 173
>SB_4835| Best HMM Match : WWE (HMM E-Value=3.7e-19)
Length = 320
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Frame = +2
Query: 230 QVTCLECCKYYVAPETASCGHSLCHLCWK----KRRTCPIC 340
Q C C + P CGH C LC K + R C IC
Sbjct: 68 QPDCPVCLQQASYPVRLPCGHMFCFLCIKGVALRSRKCAIC 108
>SB_53950| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 541
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = +2
Query: 218 EQIDQVTCLECCKYYVAPETASCGHSLCHLCWKKRRTCPICATLLERRSA--KLNRPLHT 391
EQ Q C+ C K A +++C +C K+ IC + + R+ + +P+H
Sbjct: 142 EQTPQ-KCMSCGKNTHARRDCKFYNAICRICNKRGHISDICMSSINRKKSTPSKTKPIHC 200
Query: 392 LTEHV 406
+ + +
Sbjct: 201 VEQEI 205
>SB_20851| Best HMM Match : Cbl_N3 (HMM E-Value=0)
Length = 695
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 6/85 (7%)
Frame = +2
Query: 239 CLECCKYYVAPETASCGHSLCHLC---WKKR--RTCPICATLLERRSAKLNRPLHT-LTE 400
C C + CGH +CHLC W+++ CP C + ++ + P +
Sbjct: 185 CKICAENNKDVRIEPCGHLMCHLCLEQWQEKGGDGCPFCRSPIKDIQTVVVDPFQPGGVD 244
Query: 401 HVQNLGNAFEKLFKTKLDEFTLETP 475
Q L + DE LE P
Sbjct: 245 RAQRLAEDSAEEHSDLYDEDVLEYP 269
>SB_14207| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0048)
Length = 233
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Frame = +2
Query: 218 EQIDQVTCLECCKYYVA-PETASCGHSLCHLCWKKR-----RTCPICAT 346
++++++ CC+ V P T C H++C C ++ TCP C T
Sbjct: 97 QKVEELFACVCCQDLVLYPVTTKCLHNICKGCLQRSFKAEVFTCPYCRT 145
>SB_51713| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 867
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 6/85 (7%)
Frame = +2
Query: 239 CLECCKYYVAPETASCGHSLCHLC---WKKR--RTCPICATLLERRSAKLNRPLHT-LTE 400
C C + CGH +CHLC W+++ CP C + ++ + P +
Sbjct: 381 CKICAENNKDVRIEPCGHLMCHLCLEQWQEKGGDGCPFCRSPMKDIQTVVVDPFQPGGVD 440
Query: 401 HVQNLGNAFEKLFKTKLDEFTLETP 475
Q L + DE LE P
Sbjct: 441 RAQRLAEDSAEEHSDLYDEDVLEYP 465
>SB_8394| Best HMM Match : zf-C3HC4 (HMM E-Value=8.6e-08)
Length = 1631
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 8/48 (16%)
Frame = +2
Query: 221 QIDQVTCLECCKYYVAPETA-SCGHSLCHLCWK---KRR----TCPIC 340
Q ++++C C + + P SCGHS+C C + KR CP+C
Sbjct: 17 QREEISCPVCLEVFEEPLVLPSCGHSVCLQCLQNMTKRNPPSLLCPVC 64
>SB_6802| Best HMM Match : zf-B_box (HMM E-Value=5e-18)
Length = 316
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +2
Query: 227 DQVTCLECCKYYVAPETASCGHSLCHLC 310
D+VTC C ++ P C HS C C
Sbjct: 11 DEVTCSICIEHLNDPRVLPCLHSFCRHC 38
>SB_40057| Best HMM Match : zf-B_box (HMM E-Value=1.4e-08)
Length = 584
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +2
Query: 224 IDQVTCLECCKYYVAPETASCGHSLCHLC 310
+ VTC C + Y P +C H+ C C
Sbjct: 11 VKDVTCCLCLEQYQDPRVLACLHTYCRHC 39
>SB_37011| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1829
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = +2
Query: 203 SQLVTEQIDQVTCLECCKYYVAPETASCGHSLCHLC 310
S+ + + VTC C Y P +C H+ C C
Sbjct: 5 SETKPKDVSDVTCSLCLGQYQDPRVLACLHTYCRHC 40
>SB_26592| Best HMM Match : zf-B_box (HMM E-Value=1.3e-18)
Length = 355
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +2
Query: 227 DQVTCLECCKYYVAPETASCGHSLCHLC 310
D+V C C +++ P C HS C C
Sbjct: 11 DEVRCSICIEHFNDPRVLPCFHSFCRHC 38
>SB_25653| Best HMM Match : U-box (HMM E-Value=0.0064)
Length = 336
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Frame = +2
Query: 227 DQVTCLECCKYYVAPETA-SCGHSLCHLCWKK-RRTCPIC 340
D C C + P +CGHS C C ++ R CP C
Sbjct: 52 DDFICNVCGTVMLVPVVMPNCGHSCCSSCAERVNRKCPEC 91
>SB_23234| Best HMM Match : U-box (HMM E-Value=0.0064)
Length = 349
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Frame = +2
Query: 227 DQVTCLECCKYYVAPETA-SCGHSLCHLCWKK-RRTCPIC 340
D C C + P +CGHS C C ++ R CP C
Sbjct: 52 DDFICNVCGTVMLVPVVMPNCGHSCCSSCAERVNRKCPEC 91
>SB_13725| Best HMM Match : zf-B_box (HMM E-Value=6e-14)
Length = 594
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +2
Query: 224 IDQVTCLECCKYYVAPETASCGHSLCHLC 310
+ VTC C + Y P +C H+ C C
Sbjct: 11 VKDVTCCLCLEQYQDPRVLACLHTYCRHC 39
>SB_48253| Best HMM Match : zf-C3HC4 (HMM E-Value=0.12)
Length = 156
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Frame = +2
Query: 281 SCGHSLCHLCWKK-RRTCPIC 340
+CGHS C C K+ R CP C
Sbjct: 45 NCGHSCCSTCAKRVNRKCPEC 65
>SB_14351| Best HMM Match : zf-B_box (HMM E-Value=2.3e-12)
Length = 549
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 7/50 (14%)
Frame = +2
Query: 227 DQVTCLECCKYYVAPETASCGHSLCHLCWKKRR-------TCPICATLLE 355
+++ C C + P C HSLC C K CP+C T +E
Sbjct: 17 EEIWCRYCNGIFEDPRLLPCLHSLCKKCLKDIEQAQEGAIACPVCLTDVE 66
>SB_4488| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 645
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Frame = +2
Query: 239 CLECCKYYVAPETASCGHSLCHLCWKKR--RTCPI 337
C C + + P SCGH+ C C R CP+
Sbjct: 194 CPLCRRVFKDPVITSCGHTFCQACIMARGVEKCPL 228
>SB_52669| Best HMM Match : zf-C3HC4 (HMM E-Value=0.05)
Length = 280
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +2
Query: 281 SCGHSLCHLCWKKRRTCPICATLLERRSAKL 373
+CGHS C R+TCPIC L + A+L
Sbjct: 191 TCGHSFHREC--HRKTCPICLPNLLDKLAQL 219
>SB_32622| Best HMM Match : Ank (HMM E-Value=2.2e-05)
Length = 509
Score = 28.7 bits (61), Expect = 4.6
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +2
Query: 263 VAPETASCGHSLCHLCWKK 319
V P CGH C LCW++
Sbjct: 218 VLPVALPCGHEACCLCWER 236
>SB_3354| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 632
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +2
Query: 206 QLVTEQIDQV-TCLECCKYYVAPETASCGHSLCHLC 310
Q + E ++++ TC +C + P C HS C C
Sbjct: 4 QSILENLEELLTCRQCSNVFKNPRITPCLHSFCAEC 39
>SB_48027| Best HMM Match : zf-C3HC4 (HMM E-Value=4e-10)
Length = 62
Score = 28.7 bits (61), Expect = 4.6
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 230 QVTCLECCKYYVAPETASCGHSLCHLC 310
+VTC C +++ P C HS C C
Sbjct: 12 EVTCSICIEHFNDPRVLPCLHSFCRHC 38
>SB_40632| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 776
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 314 KKRRTCPICATLLERRSAKLNRPLHTLTEHVQNLGNA 424
K + CP+C T + RRS N L + V+NL +A
Sbjct: 228 KNKWFCPLCKTPVTRRSLTPNPKLANIVAAVKNLQDA 264
>SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14)
Length = 1217
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = +2
Query: 218 EQIDQVTCLECCKYYVAPETASCGHSLCHLCWKKRRTCPIC--ATLLERRSAKLNRPLHT 391
EQ Q C+ C K A +++C +C K+ IC +T ++ + N+P H
Sbjct: 2 EQTPQ-KCMSCGKNTHARRDCKFYNAICRICNKRGHISDICMSSTNRKKNTPSKNKPTHC 60
Query: 392 LTEHV 406
+ + +
Sbjct: 61 VEQKI 65
>SB_9266| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1490
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +2
Query: 281 SCGHSLCHLCWKKRRTCPICATLLERRSAKL 373
+CGHS C R+TCPIC L + A+L
Sbjct: 639 TCGHSFHREC--HRKTCPICLPNLLDKLAQL 667
>SB_8285| Best HMM Match : Filamin (HMM E-Value=1.1e-09)
Length = 474
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Frame = +2
Query: 239 CLECCKYYVAPETASCGHSLCHLCWKKRRT----CPICA 343
C C P C HS+C C +K+ CP+C+
Sbjct: 19 CPACSNVIKDPRILPCLHSICKTCLEKQLNGCLKCPVCS 57
>SB_36107| Best HMM Match : zf-CCHC (HMM E-Value=0.00023)
Length = 425
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +2
Query: 218 EQIDQVTCLECCKYYVAPETASCGHSLCHLCWKKRRTCPICATLLERRSA--KLNRPLHT 391
EQ Q C+ C K A +++C +C K+ IC + + R+ + +P H
Sbjct: 203 EQTPQ-KCMSCGKNTHARRDCKFYNAICRICNKRGHISDICMSSINRKKSTPSKTKPTHC 261
Query: 392 LTEHV 406
+ + +
Sbjct: 262 VEQEI 266
>SB_39617| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38)
Length = 1084
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +2
Query: 218 EQIDQVTCLECCKYYVAPETASCGHSLCHLCWKKRRTCPICATLLERRSA--KLNRPLHT 391
EQ Q C+ C K A +++C +C K+ IC + + R+ + +P H
Sbjct: 191 EQTPQ-KCMSCGKNTHARRDCKFYNAICRICNKRGHISDICMSSINRKKSTPSKTKPTHC 249
Query: 392 LTEHV 406
+ + +
Sbjct: 250 VEQEI 254
>SB_23788| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38)
Length = 1122
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +2
Query: 218 EQIDQVTCLECCKYYVAPETASCGHSLCHLCWKKRRTCPICATLLERRSA--KLNRPLHT 391
EQ Q C+ C K A +++C +C K+ IC + + R+ + +P H
Sbjct: 225 EQTPQ-KCMSCGKNTHARRDCKFYNAICRICNKRGHISDICMSSINRKKSTPSKTKPTHC 283
Query: 392 LTEHV 406
+ + +
Sbjct: 284 VEQEI 288
>SB_9257| Best HMM Match : RVT_1 (HMM E-Value=9.1e-32)
Length = 1086
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +2
Query: 218 EQIDQVTCLECCKYYVAPETASCGHSLCHLCWKKRRTCPICATLLERRSA--KLNRPLHT 391
EQ Q C+ C K A +++C +C K+ IC + + R+ + +P H
Sbjct: 192 EQTPQ-KCMSCGKNTHARRDCKFYNAICRICNKRGHISDICMSSINRKKSTPSKTKPTHC 250
Query: 392 LTEHV 406
+ + +
Sbjct: 251 VEQEI 255
>SB_36597| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07)
Length = 346
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 7/47 (14%)
Frame = +2
Query: 221 QIDQ-VTCLECCKYYVAPETASCGHSLCHLC---WKKR---RTCPIC 340
+IDQ + C C T CGHS C C W R ++CP C
Sbjct: 11 KIDQNLLCNICVGVLENAITTICGHSFCESCLETWLSRPEVQSCPSC 57
>SB_2351| Best HMM Match : zf-C3HC4 (HMM E-Value=4e-07)
Length = 137
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +2
Query: 239 CLECCKYYVAP-ETASCGHSLCHLCWK 316
C C +V+P + CGH LC C+K
Sbjct: 55 CPVCEDIFVSPVQIKECGHRLCQHCYK 81
>SB_33568| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1555
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = +2
Query: 227 DQVTCLECCKYYVAPETASCGHSLCHLCWKKRR 325
D C C P SCGHS C C +K R
Sbjct: 26 DDSMCAICHIVVKDPILTSCGHSYCKCCIQKWR 58
>SB_6367| Best HMM Match : Seryl_tRNA_N (HMM E-Value=0.84)
Length = 563
Score = 27.9 bits (59), Expect = 8.0
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 3/100 (3%)
Frame = +2
Query: 350 LERRSAKLNRPLHTLTEHVQNLGNAFEKLFKTKLDEFTLETPKQPGFINDPIDNVKEWLA 529
LE ++KL+ LTE VQNL N L +T L T + +Q I+ ++ +KE A
Sbjct: 25 LEDENSKLSGQNSELTERVQNLTNDAASL-QTSLTN-TEDDLRQ---ISSQLEELKENHA 79
Query: 530 SSQNQFTNSALNSGQSSQDTVKIVNK---ELSANEFQVHT 640
+ + + +Q+ +++ K +L+ E QV +
Sbjct: 80 NETTSLKAQVASEQERNQENARVIPKLKDKLAEAEVQVES 119
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,810,122
Number of Sequences: 59808
Number of extensions: 387424
Number of successful extensions: 1109
Number of sequences better than 10.0: 82
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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