Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12g01
(681 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g18660.4 68414.m02326 zinc finger (C3HC4-type RING finger) fa... 40 0.002
At1g18660.3 68414.m02329 zinc finger (C3HC4-type RING finger) fa... 40 0.002
At1g18660.2 68414.m02328 zinc finger (C3HC4-type RING finger) fa... 40 0.002
At1g18660.1 68414.m02327 zinc finger (C3HC4-type RING finger) fa... 40 0.002
At1g68820.1 68414.m07868 membrane protein, putative contains 7 t... 39 0.004
At3g25030.1 68416.m03128 zinc finger (C3HC4-type RING finger) fa... 38 0.005
At3g27330.1 68416.m03418 zinc finger (C3HC4-type RING finger) fa... 38 0.006
At4g13100.2 68417.m02042 zinc finger (C3HC4-type RING finger) fa... 36 0.025
At4g13100.1 68417.m02041 zinc finger (C3HC4-type RING finger) fa... 36 0.025
At1g18470.1 68414.m02304 zinc finger (C3HC4-type RING finger) fa... 36 0.025
At4g21070.1 68417.m03047 BRCT domain-containing protein / zinc f... 36 0.033
At5g01960.1 68418.m00115 zinc finger (C3HC4-type RING finger) fa... 34 0.076
At1g73950.1 68414.m08564 zinc finger (C3HC4-type RING finger) fa... 33 0.13
At3g07790.1 68416.m00951 DGCR14-related similar to DGCR14 protei... 33 0.17
At5g58787.1 68418.m07365 zinc finger (C3HC4-type RING finger) fa... 32 0.31
At5g01520.1 68418.m00067 zinc finger (C3HC4-type RING finger) fa... 32 0.31
At1g62370.1 68414.m07037 zinc finger (C3HC4-type RING finger) fa... 32 0.31
At3g07120.1 68416.m00848 zinc finger (C3HC4-type RING finger) fa... 32 0.40
At2g39810.1 68415.m04890 expressed protein 32 0.40
At3g24800.1 68416.m03112 PRT1 protein (PRT1) E3, N-end rule ubiq... 31 0.53
At1g79380.1 68414.m09251 copine-related low similarity to SP|Q99... 31 0.53
At3g54360.1 68416.m06008 expressed protein DNA-binding Mel-18 pr... 31 0.71
At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger) fa... 31 0.71
At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) fa... 31 0.93
At4g12140.1 68417.m01928 zinc finger (C3HC4-type RING finger) fa... 31 0.93
At5g58160.1 68418.m07280 formin homology 2 domain-containing pro... 30 1.2
At3g47160.1 68416.m05120 expressed protein similar to MTD2 [Medi... 30 1.6
At1g02860.1 68414.m00251 SPX (SYG1/Pho81/XPR1) domain-containing... 30 1.6
At5g63970.1 68418.m08032 copine-related low similarity to SP|Q99... 29 2.2
At5g43530.1 68418.m05322 SNF2 domain-containing protein / helica... 29 2.2
At3g01650.1 68416.m00096 copine-related low similarity to SP|Q99... 29 2.2
At1g66620.1 68414.m07570 seven in absentia (SINA) protein, putat... 29 2.2
At1g26610.1 68414.m03241 zinc finger (C2H2 type) family protein ... 29 2.2
At5g18230.1 68418.m02139 transcription regulator NOT2/NOT3/NOT5 ... 29 2.8
At5g16660.1 68418.m01950 expressed protein 29 2.8
At2g31780.1 68415.m03880 zinc finger (C3HC4-type RING finger) fa... 29 2.8
At2g31770.1 68415.m03879 zinc finger (C3HC4-type RING finger) fa... 29 2.8
At2g31760.1 68415.m03878 zinc finger protein-related contains lo... 29 2.8
At1g67800.3 68414.m07738 copine-related low similarity to SP|Q99... 29 2.8
At1g67800.2 68414.m07739 copine-related low similarity to SP|Q99... 29 2.8
At1g67800.1 68414.m07737 copine-related low similarity to SP|Q99... 29 2.8
At1g05890.1 68414.m00617 zinc finger protein-related contains lo... 29 2.8
At5g14420.4 68418.m01687 copine-related low similarity to SP|Q99... 29 3.8
At5g14420.3 68418.m01686 copine-related low similarity to SP|Q99... 29 3.8
At5g14420.2 68418.m01685 copine-related low similarity to SP|Q99... 29 3.8
At5g14420.1 68418.m01684 copine-related low similarity to SP|Q99... 29 3.8
At3g12920.1 68416.m01610 expressed protein 29 3.8
At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogene... 29 3.8
At1g59560.1 68414.m06698 expressed protein contains similarity t... 29 3.8
At1g32740.1 68414.m04037 expressed protein 29 3.8
At1g04020.2 68414.m00389 zinc finger (C3HC4-type RING finger) fa... 29 3.8
At1g04020.1 68414.m00388 zinc finger (C3HC4-type RING finger) fa... 29 3.8
At2g31510.1 68415.m03850 IBR domain-containing protein / ARIADNE... 28 5.0
At3g46290.1 68416.m05010 protein kinase, putative similar to rec... 28 6.6
At1g15290.1 68414.m01830 tetratricopeptide repeat (TPR)-containi... 28 6.6
At5g25510.1 68418.m03035 serine/threonine protein phosphatase 2A... 27 8.7
At4g12190.1 68417.m01936 zinc finger (C3HC4-type RING finger) fa... 27 8.7
At3g44920.1 68416.m04839 cation/hydrogen exchanger, putative (CH... 27 8.7
>At1g18660.4 68414.m02326 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 491
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Frame = +2
Query: 212 VTEQIDQVTCLECCKYYVAPETASCGHSLCHLC----WKKRRTCPICATLL 352
+ E+ D C C K P T CGH+ C C + CP+C T++
Sbjct: 187 MAERSDDFDCTVCLKLLYEPATTPCGHTFCRSCLFQSMDRGNKCPLCRTVI 237
>At1g18660.3 68414.m02329 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 486
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Frame = +2
Query: 212 VTEQIDQVTCLECCKYYVAPETASCGHSLCHLC----WKKRRTCPICATLL 352
+ E+ D C C K P T CGH+ C C + CP+C T++
Sbjct: 187 MAERSDDFDCTVCLKLLYEPATTPCGHTFCRSCLFQSMDRGNKCPLCRTVI 237
>At1g18660.2 68414.m02328 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 486
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Frame = +2
Query: 212 VTEQIDQVTCLECCKYYVAPETASCGHSLCHLC----WKKRRTCPICATLL 352
+ E+ D C C K P T CGH+ C C + CP+C T++
Sbjct: 187 MAERSDDFDCTVCLKLLYEPATTPCGHTFCRSCLFQSMDRGNKCPLCRTVI 237
>At1g18660.1 68414.m02327 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 486
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Frame = +2
Query: 212 VTEQIDQVTCLECCKYYVAPETASCGHSLCHLC----WKKRRTCPICATLL 352
+ E+ D C C K P T CGH+ C C + CP+C T++
Sbjct: 187 MAERSDDFDCTVCLKLLYEPATTPCGHTFCRSCLFQSMDRGNKCPLCRTVI 237
>At1g68820.1 68414.m07868 membrane protein, putative contains 7
transmembrane domains; similar to inhibitor of
apoptosis-2 IAP-2 (GI:20043383) [Mamestra configurata
nucleopolyhedrovirus]
Length = 468
Score = 38.7 bits (86), Expect = 0.004
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Frame = +2
Query: 173 LIEDLDINLLSQLVTEQI--DQVTCLECCKYYVAPETASCGHS-LCHLCWKKRRTCPICA 343
L E DI SQ E++ +++ C C + + C H LC C +K + CPIC
Sbjct: 397 LSEQTDITSYSQQEYERLQNEKILCRVCFEDPINVVLLPCRHHVLCSTCCEKCKKCPICR 456
Query: 344 TLLERR 361
L+E R
Sbjct: 457 VLIEER 462
>At3g25030.1 68416.m03128 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 250
Score = 38.3 bits (85), Expect = 0.005
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 10/56 (17%)
Frame = +2
Query: 218 EQIDQVTCLE--CCKYYVAPETAS---CGHSLCHLC----WKKRRTCPIC-ATLLE 355
E++ VT E CC V + A+ CGH+ C LC W +R CP+C T+LE
Sbjct: 190 EEVAAVTAAEISCCVCMVRSKGAAFIPCGHTFCRLCSRELWVQRGNCPLCNTTILE 245
>At3g27330.1 68416.m03418 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profiles: PF00097 zinc
finger, C3HC4 type (RING finger), PF01697 Domain of
unknown function
Length = 913
Score = 37.9 bits (84), Expect = 0.006
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Frame = +2
Query: 227 DQVTCLECCKYYVAPETASCGHSLCHLCWKKR-----RTCPICATLL 352
D+++C C + P T +CGHS C C + R CP C L+
Sbjct: 720 DELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGRKCPKCRQLI 766
>At4g13100.2 68417.m02042 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 265
Score = 35.9 bits (79), Expect = 0.025
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
Frame = +2
Query: 242 LECCKYYVAPETAS---CGHSLCHLC----WKKRRTCPICATLL 352
L CC V + A+ CGH+ C LC W +R CP+C T +
Sbjct: 215 LGCCVCMVRSKGAAFIPCGHTFCRLCSRELWVQRGNCPLCNTAI 258
>At4g13100.1 68417.m02041 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 304
Score = 35.9 bits (79), Expect = 0.025
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
Frame = +2
Query: 242 LECCKYYVAPETAS---CGHSLCHLC----WKKRRTCPICATLL 352
L CC V + A+ CGH+ C LC W +R CP+C T +
Sbjct: 254 LGCCVCMVRSKGAAFIPCGHTFCRLCSRELWVQRGNCPLCNTAI 297
>At1g18470.1 68414.m02304 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 467
Score = 35.9 bits (79), Expect = 0.025
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Frame = +2
Query: 179 EDLDINLLSQLVTEQI--DQVTCLECCKYYVAPETASCGHS-LCHLCWKKRRTCPICATL 349
E +I SQ E++ ++V C C + ++ C H LC C K TCPIC
Sbjct: 398 EQTEITKFSQQEYERLQNEKVLCRVCFEKDISLVLLPCRHRVLCRTCADKCTTCPICRID 457
Query: 350 LERR 361
+E+R
Sbjct: 458 IEKR 461
>At4g21070.1 68417.m03047 BRCT domain-containing protein / zinc
finger (C3HC4-type RING finger) family protein (BRCA1)
contains Pfam profiles PF00533: BRCA1 C Terminus (BRCT)
domain, PF00097: Zinc finger, C3HC4 type (RING finger),
PF01535: PPR repeat; identical to cDNA BRCA1 GI:28372473
Length = 1276
Score = 35.5 bits (78), Expect = 0.033
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Frame = +2
Query: 230 QVTCLECCKYYVAPETASCGHSLCHLC----WKKRRTCPICATLLERRSAKLNRPLHTLT 397
++ C C Y + + SC H C+ C K TCP+C RR + + +L
Sbjct: 348 ELKCPICLSLYNSAVSLSCNHVFCNACIVKSMKMDATCPVCKIPYHRREIRGAPHMDSLV 407
Query: 398 EHVQNLGNAFE-KLFKTKLDEFTLETPKQ 481
+N+ +A KLF ++ + + KQ
Sbjct: 408 SIYKNMEDASGIKLFVSQNNPSPSDKEKQ 436
>At5g01960.1 68418.m00115 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 426
Score = 34.3 bits (75), Expect = 0.076
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Frame = +2
Query: 155 FFFNKMLIEDLDINLLSQLVTEQIDQV--TCLECCKYYVAPETASCGHSLCHLC---WKK 319
FF + +++ S TEQ++ C C + P C H C C W +
Sbjct: 335 FFTALKALSRKEVHYGSYATTEQVNAAGDLCAICQEKMHTPILLRCKHMFCEDCVSEWFE 394
Query: 320 R-RTCPICATLLERRSAK 370
R RTCP+C L++ K
Sbjct: 395 RERTCPLCRALVKPADLK 412
>At1g73950.1 68414.m08564 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 466
Score = 33.5 bits (73), Expect = 0.13
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Frame = +2
Query: 179 EDLDINLLSQLVTEQI--DQVTCLECCKYYVAPETASCGHS-LCHLCWKKRRTCPICATL 349
E +I SQ E++ ++V C C + ++ C H LC C K + CP C
Sbjct: 397 EQTEITKFSQQEYERLQNEKVLCRVCFEREISVVLLPCRHRVLCRNCSDKCKKCPFCRIT 456
Query: 350 LERR 361
+E R
Sbjct: 457 IEER 460
>At3g07790.1 68416.m00951 DGCR14-related similar to DGCR14 protein
(DiGeorge syndrome critical region 14) (ES2 protein)
(Swiss-Prot:Q96DF8) [Homo sapiens]
Length = 508
Score = 33.1 bits (72), Expect = 0.17
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = +2
Query: 347 LLERRSAKLNRPLHTLTEHVQNLGNAFEKLFKTKLDEFTLETPKQPG 487
++ERR K N + Q G+ F + F T LDEF +TP+ PG
Sbjct: 97 IIERRGKKANHHVGDTEGKTQTPGSTFLRNF-TPLDEFDGKTPRTPG 142
>At5g58787.1 68418.m07365 zinc finger (C3HC4-type RING finger)
family protein similar to MTD2 [Medicago truncatula]
GI:9294812; contains Pfam profile PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 242
Score = 32.3 bits (70), Expect = 0.31
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Frame = +2
Query: 167 KMLIEDLDINLLSQLVTEQIDQV-TCLECCKYYVAPETASCGHSLCHLC---WKKR-RTC 331
KM D + +S++ E+ ++ C+E V P +C HSLC C W+ R ++C
Sbjct: 122 KMRYRKKDESEMSEIEIEREEECGICMEMNSKVVLP---NCTHSLCIKCYRDWRGRSQSC 178
Query: 332 PICATLLER 358
P C L+R
Sbjct: 179 PFCRDSLKR 187
>At5g01520.1 68418.m00067 zinc finger (C3HC4-type RING finger)
family protein similar to MTD2 [Medicago truncatula]
GI:9294812; contains Pfam profile PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 242
Score = 32.3 bits (70), Expect = 0.31
Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 5/110 (4%)
Frame = +2
Query: 188 DINLLSQLVTEQIDQV-TCLECCKYYVAPETASCGHSLCHLC---WKKR-RTCPICATLL 352
D +S++ E+ ++ CLE V P +C HS+C C W+ R ++CP C L
Sbjct: 131 DKGKMSEIDLEREEECGICLEIRNKVVLP---TCNHSMCINCYRNWRARSQSCPFCRGSL 187
Query: 353 ERRSAKLNRPLHTLTEHVQNLGNAFEKLFKTKLDEFTLETPKQPGFINDP 502
+R ++ + ++T + + +L ++K L + K P +DP
Sbjct: 188 KRVNSG-DLWIYTCSAEIADL----PAIYKENLKRLLIYIDKLPLVTSDP 232
>At1g62370.1 68414.m07037 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 204
Score = 32.3 bits (70), Expect = 0.31
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 4/23 (17%)
Frame = +2
Query: 284 CGHSLCHLC----WKKRRTCPIC 340
CGH+ C +C W R TCP+C
Sbjct: 171 CGHTYCRVCSREIWMNRGTCPLC 193
>At3g07120.1 68416.m00848 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 Zinc
finger, C3HC4 type (RING finger)
Length = 360
Score = 31.9 bits (69), Expect = 0.40
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 7/44 (15%)
Frame = +2
Query: 242 LECCKYYVAPETAS---CGHSLCHLCWK----KRRTCPICATLL 352
L CC V + AS CGH+ C LC K ++ CP+C++ +
Sbjct: 310 LSCCVCMVKIKGASFTPCGHTFCKLCSKELMAQKGHCPVCSSFV 353
>At2g39810.1 68415.m04890 expressed protein
Length = 865
Score = 31.9 bits (69), Expect = 0.40
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = +2
Query: 197 LLSQLVTEQIDQVTCLECCKYYVAPETASCGH-SLCHLCWKKRRTCPICATLLERRSAKL 373
L ++ E+ L C +V CGH SLC C ++ CPIC + L + +L
Sbjct: 44 LCNEAKVERCRATRDLASCGRFVNYVLNPCGHASLCTECCQRCDVCPICRSTLPKFGDRL 103
Query: 374 NRPLH 388
L+
Sbjct: 104 RLRLY 108
>At3g24800.1 68416.m03112 PRT1 protein (PRT1) E3, N-end rule
ubiquitin ligase, contains two RING finger domain;
identical to PRT1 [Arabidopsis thaliana] GI:3319884
Length = 410
Score = 31.5 bits (68), Expect = 0.53
Identities = 16/44 (36%), Positives = 17/44 (38%), Gaps = 6/44 (13%)
Frame = +2
Query: 227 DQVTCLECCKYYVAPETASCGHSLCHLCWKKRRT------CPIC 340
DQ C C + P SCGH C C K CPIC
Sbjct: 22 DQFLCCVCLELLYKPIVLSCGHLSCFWCVHKSMNGFRESHCPIC 65
>At1g79380.1 68414.m09251 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 401
Score = 31.5 bits (68), Expect = 0.53
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +2
Query: 281 SCGHSLCHLCWKKRRTCPICATLLERR 361
SCGH C C K CPIC + R
Sbjct: 370 SCGHMTCGDCGSKISNCPICRVRITNR 396
>At3g54360.1 68416.m06008 expressed protein DNA-binding Mel-18
protein, Homo sapiens, PIR:JN0717
Length = 405
Score = 31.1 bits (67), Expect = 0.71
Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +2
Query: 215 TEQIDQVTCLEC-CKYYVAPETASCGHSLCHLCWKKRRTCPICATLLE 355
T ++ +C+ C Y + C H C +C + + CP+C +E
Sbjct: 100 TFKLGPFSCMLCQALLYESSRCVPCTHVFCKVCLTRFKDCPLCGADIE 147
>At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 772
Score = 31.1 bits (67), Expect = 0.71
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +2
Query: 233 VTCLECCKYYVAPETASCGHSLCHLC 310
V C C +Y + P+ SCGH C C
Sbjct: 243 VQCPICLEYPLCPQITSCGHIFCFPC 268
>At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) family
protein contains Pfam profile: PF00097 zinc finger, C3HC4
type (RING finger)
Length = 4706
Score = 30.7 bits (66), Expect = 0.93
Identities = 17/51 (33%), Positives = 20/51 (39%)
Frame = +2
Query: 230 QVTCLECCKYYVAPETASCGHSLCHLCWKKRRTCPICATLLERRSAKLNRP 382
Q C C V CGH LC C CP C L R+ ++ RP
Sbjct: 4657 QWLCQICQTKEVEVTIVPCGHVLCRHCSTSVSRCPFC-RLQVNRTIRIFRP 4706
>At4g12140.1 68417.m01928 zinc finger (C3HC4-type RING finger)
family protein low similarity to RING-H2 finger proteins
RHG1a [Arabidopsis thaliana] GI:3822225, RHY1a
[Arabidopsis thaliana] GI:3790593; contains Pfam profile
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 202
Score = 30.7 bits (66), Expect = 0.93
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Frame = +2
Query: 269 PETASCGH---SLCHLCWKKRR-TCPICATLLERR 361
P SC H S C + W KR+ TCP+C T+L R
Sbjct: 168 PTRMSCSHVFHSSCLVEWLKRKNTCPMCRTVLYDR 202
>At5g58160.1 68418.m07280 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|Q05858 Formin (Limb deformity protein) {Gallus
gallus}; contains Pfam profile PF02181: Formin Homology
2(FH2) Domain
Length = 1307
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/91 (21%), Positives = 44/91 (48%)
Frame = +2
Query: 377 RPLHTLTEHVQNLGNAFEKLFKTKLDEFTLETPKQPGFINDPIDNVKEWLASSQNQFTNS 556
+ +H + +H +A KL E T++TP++P P D+VK+++A +
Sbjct: 412 KSIHDIMKHAAIENSAKFKLSSMSEVE-TIDTPEKP-----PTDSVKKFIAEDVHSVLQI 465
Query: 557 ALNSGQSSQDTVKIVNKELSANEFQVHTKVI 649
+S+D K++++E + + H+ +
Sbjct: 466 NNQEQNASEDATKLLHQESPSLKLVHHSATV 496
>At3g47160.1 68416.m05120 expressed protein similar to MTD2
[Medicago truncatula] GI:9294812; supporting cDNA
gi|25083983|gb|BT002136.1|
Length = 245
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Frame = +2
Query: 200 LSQLVTEQIDQV-TCLECCKYYVAPETASCGHSLCHLCWK----KRRTCPICATLLER 358
LS++ E+ ++ C+E V P +C HSLC C++ + +CP C L+R
Sbjct: 136 LSEIDIEREEECGICMEMNNMVVLP---NCTHSLCIKCYRDWHGRSESCPFCRDSLKR 190
>At1g02860.1 68414.m00251 SPX (SYG1/Pho81/XPR1) domain-containing
protein / zinc finger (C3HC4-type RING finger)
protein-related weak similarity to tripartite motif
protein TRIM13 [Mus musculus] GI:12407427, gpStaf50
[Homo sapiens] GI:899300; contains Pfam profiles
PF03105: SPX domain, PF00097: Zinc finger, C3HC4 type
(RING finger)
Length = 335
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 200 LSQLVTEQIDQVTCLECCKYYVAPETASCGHSLCHLC 310
LS V ID +TC C P + +CGH C++C
Sbjct: 219 LSDSVKVDID-LTCSICLDTVFDPISLTCGHIYCYMC 254
>At5g63970.1 68418.m08032 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 367
Score = 29.5 bits (63), Expect = 2.2
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 281 SCGHSLCHLCWKKRRTCPIC 340
SCGH+ C C TCP+C
Sbjct: 336 SCGHTTCKECGVVITTCPLC 355
>At5g43530.1 68418.m05322 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger domain-containing
protein similar to SP|P36607 DNA repair protein rad8
{Schizosaccharomyces pombe}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain, PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 1277
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 6/46 (13%)
Frame = +2
Query: 239 CLECCKYYVAPETASCGHSLCHLC----WKKRRT--CPICATLLER 358
C C + P C H +C C W+ CPIC T+L+R
Sbjct: 1040 CPICLESADDPVLTPCAHRMCRECLLTSWRSPSCGLCPICRTILKR 1085
>At3g01650.1 68416.m00096 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 489
Score = 29.5 bits (63), Expect = 2.2
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +2
Query: 284 CGHSLCHLCWKKRRTCPICATLLERR 361
CGH C C + CPIC ++ R
Sbjct: 460 CGHQTCCECGPDLKVCPICRAPIQTR 485
>At1g66620.1 68414.m07570 seven in absentia (SINA) protein, putative
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 313
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Frame = +2
Query: 221 QIDQVTCLECCKYYVAPE-TASCGHSLCHLCWKK-RRTCPICA 343
++D + C CC +P GH C C K R CP CA
Sbjct: 38 ELDLLDCPICCHALTSPIFQCDNGHIACSSCCTKLRNKCPSCA 80
>At1g26610.1 68414.m03241 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 455
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +2
Query: 164 NKMLIEDLDINLLSQLVTEQIDQVT--CLECCKYYVAPETASCGHSLCH 304
NK ++ I L Q +Q Q C EC K +V+ + A CGH CH
Sbjct: 68 NKRFVDHRQIMALKQQQQQQQLQELRRCRECGKGFVSSK-ALCGHMACH 115
>At5g18230.1 68418.m02139 transcription regulator NOT2/NOT3/NOT5
family protein contains Pfam domain PF04153: NOT2 / NOT3
/ NOT5 family
Length = 843
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/86 (22%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Frame = +2
Query: 368 KLNRPLHTLTEHVQNLGNAFEKLFKT----KLDEFTLETPKQPGFINDPIDNVKEWLASS 535
+++R L + E V + + K++ T + ++F + K+ + D +K W+ SS
Sbjct: 10 EIDRVLKKVQEGVDVFDSIWNKVYDTDNVNQKEKFEADLKKEIKKLQRYRDQIKTWIQSS 69
Query: 536 QNQFTNSALNSGQSSQDTVKIVNKEL 613
+ + + + QS D K++ KE+
Sbjct: 70 EIKDKKVSASYEQSLVDARKLIEKEM 95
>At5g16660.1 68418.m01950 expressed protein
Length = 168
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +2
Query: 452 DEFTLETPKQPGFINDPIDNVKEWLASSQNQFTNSALNSGQS 577
DE+ E PKQP + ++ ++ +E L Q NSA+++ S
Sbjct: 102 DEYGFEKPKQPTYYDEGLEKTRETLNEKIGQL-NSAIDNVSS 142
>At2g31780.1 68415.m03880 zinc finger (C3HC4-type RING finger)
family protein contains a Prosite:PS00518 Zinc finger,
C3HC4 type (RING finger), signature and Pfam:PF01485 IBR
domain
Length = 537
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Frame = +2
Query: 233 VTCLECCKYYVAPETA--SCGHSLCHLCW 313
+ C C + Y E A SCGH C CW
Sbjct: 137 IQCGICFESYTRKEIARVSCGHPYCKTCW 165
>At2g31770.1 68415.m03879 zinc finger (C3HC4-type RING finger)
family protein contains a Prosite:PS00518 Zinc finger,
C3HC4 type (RING finger), signature and Pfam domain,
PF01485: IBR domain
Length = 543
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Frame = +2
Query: 233 VTCLECCKYYVAPETA--SCGHSLCHLCW 313
+ C C + Y E A SCGH C CW
Sbjct: 126 IQCGICFESYTREEIARVSCGHPYCKTCW 154
>At2g31760.1 68415.m03878 zinc finger protein-related contains low
similarity to zinc finger proteins and Pfam PF01485: IBR
domain
Length = 514
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Frame = +2
Query: 233 VTCLECCKYYVAPETAS--CGHSLCHLCW 313
+ C C + Y E AS CGH C CW
Sbjct: 119 IQCGICFESYTRKEIASVSCGHPYCKTCW 147
>At1g67800.3 68414.m07738 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 433
Score = 29.1 bits (62), Expect = 2.8
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 281 SCGHSLCHLCWKKRRTCPICATLLERR 361
+CGH C C + CPIC + + R
Sbjct: 403 NCGHQTCAGCGEDLHVCPICRSSISVR 429
>At1g67800.2 68414.m07739 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 453
Score = 29.1 bits (62), Expect = 2.8
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 281 SCGHSLCHLCWKKRRTCPICATLLERR 361
+CGH C C + CPIC + + R
Sbjct: 423 NCGHQTCAGCGEDLHVCPICRSSISVR 449
>At1g67800.1 68414.m07737 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 433
Score = 29.1 bits (62), Expect = 2.8
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 281 SCGHSLCHLCWKKRRTCPICATLLERR 361
+CGH C C + CPIC + + R
Sbjct: 403 NCGHQTCAGCGEDLHVCPICRSSISVR 429
>At1g05890.1 68414.m00617 zinc finger protein-related contains low
similarity to zinc finger proteins and Pfam PF01485: IBR
domain
Length = 552
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Frame = +2
Query: 230 QVTCLECCKYYVAPE--TASCGHSLCHLCW 313
+ TC C Y E + SCGH C CW
Sbjct: 129 EFTCGICFDSYTLEEIVSVSCGHPFCATCW 158
>At5g14420.4 68418.m01687 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +2
Query: 284 CGHSLCHLCWKKRRTCPICATLLERR 361
CGH C C + CPIC ++ R
Sbjct: 439 CGHQTCCECGPDLQMCPICRAPIQTR 464
>At5g14420.3 68418.m01686 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +2
Query: 284 CGHSLCHLCWKKRRTCPICATLLERR 361
CGH C C + CPIC ++ R
Sbjct: 439 CGHQTCCECGPDLQMCPICRAPIQTR 464
>At5g14420.2 68418.m01685 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +2
Query: 284 CGHSLCHLCWKKRRTCPICATLLERR 361
CGH C C + CPIC ++ R
Sbjct: 439 CGHQTCCECGPDLQMCPICRAPIQTR 464
>At5g14420.1 68418.m01684 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +2
Query: 284 CGHSLCHLCWKKRRTCPICATLLERR 361
CGH C C + CPIC ++ R
Sbjct: 439 CGHQTCCECGPDLQMCPICRAPIQTR 464
>At3g12920.1 68416.m01610 expressed protein
Length = 335
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Frame = +2
Query: 239 CLECCKYYVAPETASCGHS-LCHLCWKKRRTCPIC 340
C C K + C H LC +C TCPIC
Sbjct: 287 CRSCGKGEASVLLLPCRHMCLCSVCGSSLNTCPIC 321
>At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogenesis
repressor; identical to COP1 regulatory protein/FUSCA
protein FUS1 GI:402685 SP:P43254
Length = 675
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Frame = +2
Query: 203 SQLVTEQIDQ-VTCLECCKYYVAPETASCGHSLCHLC----WKKRRTCPICA 343
S++ +D+ + C C + +CGHS C++C + + CP C+
Sbjct: 39 SEIGAPDLDKDLLCPICMQIIKDAFLTACGHSFCYMCIITHLRNKSDCPCCS 90
>At1g59560.1 68414.m06698 expressed protein contains similarity to
apoptosis inhibitors
Length = 338
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Frame = +2
Query: 239 CLECCKYYVAPETASCGHSLCHL-CWKKRRTCPICATLLER 358
C+ C CGH C C + RTCP+C +++
Sbjct: 291 CVVCLDQKYNTAFVECGHMCCCTPCSLQLRTCPLCRERIQQ 331
>At1g32740.1 68414.m04037 expressed protein
Length = 312
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = +2
Query: 218 EQIDQVTCLECCKYYVAPETASCGH-SLCHLCWKKRRTCPICATL 349
E++ + C C + C H S+C C + CP+C TL
Sbjct: 258 ERVKRPNCKACREREATVVVLPCRHLSICPGCDRTALACPLCLTL 302
>At1g04020.2 68414.m00389 zinc finger (C3HC4-type RING finger)
family protein / BRCT domain-containing protein contains
Pfam domain, PF00533: BRCA1 C Terminus (BRCT) domain
Length = 713
Score = 28.7 bits (61), Expect = 3.8
Identities = 23/98 (23%), Positives = 37/98 (37%), Gaps = 4/98 (4%)
Frame = +2
Query: 230 QVTCLECCKYYVAPETASCGHSLCHLCWKK----RRTCPICATLLERRSAKLNRPLHTLT 397
++ C C K P C H C C K CP+C + + K R L +
Sbjct: 22 ELKCPLCLKLLNRPVLLPCDHVFCDSCVHKSSQVESGCPVCKS---KHPKKARRDLRFM- 77
Query: 398 EHVQNLGNAFEKLFKTKLDEFTLETPKQPGFINDPIDN 511
E V ++ + L + L+ P + ND ++N
Sbjct: 78 ESVISIYKSLNAAVSVHLPQ--LQIPNDCNYKNDALNN 113
>At1g04020.1 68414.m00388 zinc finger (C3HC4-type RING finger)
family protein / BRCT domain-containing protein contains
Pfam domain, PF00533: BRCA1 C Terminus (BRCT) domain
Length = 714
Score = 28.7 bits (61), Expect = 3.8
Identities = 23/98 (23%), Positives = 37/98 (37%), Gaps = 4/98 (4%)
Frame = +2
Query: 230 QVTCLECCKYYVAPETASCGHSLCHLCWKK----RRTCPICATLLERRSAKLNRPLHTLT 397
++ C C K P C H C C K CP+C + + K R L +
Sbjct: 22 ELKCPLCLKLLNRPVLLPCDHVFCDSCVHKSSQVESGCPVCKS---KHPKKARRDLRFM- 77
Query: 398 EHVQNLGNAFEKLFKTKLDEFTLETPKQPGFINDPIDN 511
E V ++ + L + L+ P + ND ++N
Sbjct: 78 ESVISIYKSLNAAVSVHLPQ--LQIPNDCNYKNDALNN 113
>At2g31510.1 68415.m03850 IBR domain-containing protein /
ARIADNE-like protein ARI7 (ARI7) identical to
ARIADNE-like protein ARI7 [Arabidopsis thaliana]
GI:29125028; contains similarity to Swiss-Prot:Q94981
ariadne-1 protein (Ari-1) [Drosophila melanogaster];
contains Pfam profile PF01485: IBR domain
Length = 562
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Frame = +2
Query: 230 QVTCLECCKYYVAPETAS--CGHSLCHLCW 313
++TC C Y + AS CGH C CW
Sbjct: 134 ELTCGICFDSYPPEKIASVSCGHPFCTTCW 163
>At3g46290.1 68416.m05010 protein kinase, putative similar to
receptor-like protein kinase [Catharanthus roseus]
gi|1644291|emb|CAA97692
Length = 830
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -3
Query: 673 PLLNNFSQYDFSMNLKFICGQFFINNLD 590
P +NNFSQ D S+N+ G+F +++D
Sbjct: 783 PQINNFSQGDTSVNVPGTAGRFEESSID 810
>At1g15290.1 68414.m01830 tetratricopeptide repeat (TPR)-containing
protein ESTs gb|F20110 and gb|F20109 come from this
gene; contains Pfam profile PF00515: TPR Domain
Length = 1558
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +2
Query: 386 HTLTEHVQNLGNAFEKLFKTKLDEFTLETPKQPGFINDPID-NVKEWLASS 535
H++ + +QN+ NAF K +++ + FT + K F N P WL S
Sbjct: 230 HSIVDLLQNVSNAFAKAYESLMKAFT-DRNKVADFGNLPFGLRSNTWLVPS 279
>At5g25510.1 68418.m03035 serine/threonine protein phosphatase 2A
(PP2A) regulatory subunit B', putative similar to
SWISS-PROT:Q28653 serine/threonine protein phosphatase
2A, 56 kDa regulatory subunit, delta isoform (PP2A, B
subunit, B' delta isoform, PP2A, B subunit, B56 delta
isoform, PP2A, B subunit, PR61 delta isoform, PP2A, B
subunit, R5 delta isoform, PP2A, B subunit, B'-gamma)
[Oryctolagus cuniculus]; contains Pfam domain, PF01603:
Protein phosphatase 2A regulatory B subunit (B56 family)
Length = 500
Score = 27.5 bits (58), Expect = 8.7
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = -1
Query: 75 SFLEICKMCVILLINIFPPD 16
+ L +C+MC + L +FPP+
Sbjct: 133 AILAMCRMCAVNLFRVFPPN 152
>At4g12190.1 68417.m01936 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 71
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = +2
Query: 290 HSLCHLCWKKRR-TCPICATLL 352
H+ C L W KR+ TCP+C T L
Sbjct: 48 HNGCLLEWLKRKNTCPLCRTEL 69
>At3g44920.1 68416.m04839 cation/hydrogen exchanger, putative
(CHX11) monovalent cation:proton antiporter family 2
(CPA2) member, PMID:11500563
Length = 671
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +2
Query: 182 DLDINLLSQLVTEQIDQVTCLECCKYYVAPETASCGHSL 298
D+ N+ L+ I V CL C YY P + S SL
Sbjct: 243 DIYFNIFLTLLILVIKLVACLTLCLYYKLPRSESLAVSL 281
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,919,896
Number of Sequences: 28952
Number of extensions: 276817
Number of successful extensions: 806
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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