Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12f24
         (541 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    24   0.98 
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    21   5.2  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   6.9  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    21   9.2  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.8 bits (49), Expect = 0.98
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 342 RCPAGDPGQSERSVLGSVPDTLAP 413
           RCP+G+   SER+ L     TL+P
Sbjct: 97  RCPSGESMLSERAALLRGVPTLSP 120


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = -1

Query: 415 PGASVSGTDPSTERSDCPGSPAGHRAPSPGDETCSTVSKL 296
           PG  + G    +  S   G PAG++     + T  T ++L
Sbjct: 42  PGLGLHGLPVDSLHSSMAGYPAGNQRKQRRERTTFTRAQL 81


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +3

Query: 90  IQQRIEMSDIRIGNLEVEARRGDAGSQGC 176
           +QQ I    + +G  + E+R  D    GC
Sbjct: 380 LQQLIRERQLAVGGSQEESRVLDLSKPGC 408


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -3

Query: 293 NRSSLVTTPS 264
           N SSL+TTPS
Sbjct: 260 NTSSLITTPS 269


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,766
Number of Sequences: 336
Number of extensions: 2869
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13201902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)