BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov12f24 (541 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced prot... 23 2.0 DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 23 2.6 Z26318-1|CAA81227.1| 544|Apis mellifera royal jelly protein RJP... 22 3.5 DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein. 21 8.1 >AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced protein 75 protein. Length = 900 Score = 23.0 bits (47), Expect = 2.0 Identities = 13/42 (30%), Positives = 20/42 (47%) Frame = -1 Query: 406 SVSGTDPSTERSDCPGSPAGHRAPSPGDETCSTVSKL*TDLP 281 S SG + TE+ D P S + AP+ + + K D+P Sbjct: 578 SDSGIESGTEKPDKPASSSASSAPTSVCSSPRSEDKEVEDMP 619 >DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine receptor beta1subunit protein. Length = 520 Score = 22.6 bits (46), Expect = 2.6 Identities = 11/29 (37%), Positives = 14/29 (48%) Frame = -2 Query: 225 VSVNIGTVDVSVANVNGILDCLRHLAWLR 139 V VN G V + NVN ++ WLR Sbjct: 52 VHVNFGLAFVQLINVNEKNQIMKSNVWLR 80 >Z26318-1|CAA81227.1| 544|Apis mellifera royal jelly protein RJP57-1 protein. Length = 544 Score = 22.2 bits (45), Expect = 3.5 Identities = 9/26 (34%), Positives = 14/26 (53%) Frame = +3 Query: 222 KREGSRRSYNQQN*GRSRNEGRSVHN 299 KR G+R++ NQ N + VH+ Sbjct: 514 KRNGNRQNDNQNNQNDNNRNDNQVHH 539 >DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein. Length = 630 Score = 21.0 bits (42), Expect = 8.1 Identities = 7/11 (63%), Positives = 9/11 (81%) Frame = -3 Query: 455 DWSVGKREPSS 423 DWSVGK+ +S Sbjct: 42 DWSVGKKNSNS 52 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 153,081 Number of Sequences: 438 Number of extensions: 3244 Number of successful extensions: 4 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4 length of database: 146,343 effective HSP length: 54 effective length of database: 122,691 effective search space used: 15336375 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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