Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12f22
         (522 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    28   0.97 
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    28   0.97 
SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|ch...    27   1.7  
SPAPB8E5.05 |mfm1||M-factor precursor Mfm1|Schizosaccharomyces p...    26   3.0  
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    26   3.0  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   3.9  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    25   5.2  
SPBPJ4664.03 |mfm3||M-factor precursor Mfm3|Schizosaccharomyces ...    25   6.8  
SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos...    25   6.8  
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p...    25   6.8  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   9.0  
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   9.0  
SPAC1635.01 |||voltage-dependent anion-selective channel|Schizos...    25   9.0  

>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 327 SKEINTENKLSRDLKESLKKIWRLRTKI 410
           S  ++ + KL  DLK  +KK+ RLR +I
Sbjct: 24  SNSVSQKEKLEGDLKTQIKKLQRLRDQI 51


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1583

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 84   LSCKINCKKIIILEHQKDRNYRVNFFIILSTLNKFTRAF 200
            LSC  N    ++ E Q D + +   + I+STL  F+RAF
Sbjct: 992  LSCLFNQLIEVVTEDQVDESTKGILYEIMSTLFVFSRAF 1030


>SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 492

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -1

Query: 135 LFDVLILLFFYNLFCKTVYSACRSACGDAVLRAVRLPRTTL 13
           L DV  L F YN FC+  Y+  +  CG    +AV     TL
Sbjct: 84  LCDVFHLSFLYNPFCR--YTFYKHFCGGETPQAVMATMDTL 122


>SPAPB8E5.05 |mfm1||M-factor precursor Mfm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 42

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 298 SNPASAINNTVKKSTPKINFRAI 366
           + PA  +N TVK  TPK+ +  +
Sbjct: 18  NKPAETLNKTVKNYTPKVPYMCV 40


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 429 ICYVLPSVLAGLAVQNMCLEKSCLVNLQYDE 521
           +CY LP+V+ G A + + L  S L++L  D+
Sbjct: 549 LCYQLPAVIEGGASRGVTLVISPLLSLMQDQ 579


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/28 (39%), Positives = 21/28 (75%)
 Frame = -3

Query: 178  KVDKIIKKFTL*LRSF*CSNIIIFLQFI 95
            KVD++I+++ L ++SF  S +++F  FI
Sbjct: 3707 KVDELIRRYKLSIKSF-LSVVVVFQHFI 3733


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 159 RNLLCNCDLFDVLILLFFYNLFCKTVY 79
           +N    C +  +L  LFF N+F KTVY
Sbjct: 233 KNQGATCYMNSLLQSLFFTNIFRKTVY 259


>SPBPJ4664.03 |mfm3||M-factor precursor Mfm3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 41

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 298 SNPASAINNTVKKSTPKINFRAI 366
           + P+  +N TVK  TPK+ +  +
Sbjct: 17  NKPSETLNKTVKNYTPKVPYMCV 39


>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
           Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = +3

Query: 69  YMHCTLSCKINCKKIII-LEHQKDRNYRVNFFIILSTLNKFTRAF 200
           YM+C L C   CK + I +   +     +N    L T  K T AF
Sbjct: 82  YMNCVLQCLFACKDLTIPMLQGRGLLQNINTKNPLGTGGKITSAF 126


>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 832

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 15/58 (25%), Positives = 27/58 (46%)
 Frame = -3

Query: 355 SLFSVLISLLYCLLHLQGSTLTTFSPGTSTRSVILIIVHCSLHLFYFVHVI*NARVNL 182
           +L S+   L+Y +L    +T+     GT      +   H  LH++Y  + + NA  N+
Sbjct: 586 TLPSLSDKLVYSILQSNPNTVVVTQSGTPIEMPWISEAHTLLHIWYNGNELGNALANI 643


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/54 (20%), Positives = 27/54 (50%)
 Frame = +3

Query: 33  VLRATQHRRTRSYMHCTLSCKINCKKIIILEHQKDRNYRVNFFIILSTLNKFTR 194
           +L+   HR+  +Y+H   +C +   K +  + +K   +  N F ++  + + T+
Sbjct: 526 MLQLLIHRKGLTYLHLDYNCNLKPTKTLTTKERKKSRFG-NAFHLMREILRLTK 578


>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 547

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -1

Query: 147 CNCDLFDVLILLFFYNLFCKTVYSACRSACGD 52
           C+ +++ ++I  FF+  F  T  SAC     D
Sbjct: 193 CSKNIWSLVIFRFFHGFFGCTPMSACGGTISD 224


>SPAC1635.01 |||voltage-dependent anion-selective
           channel|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 282

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = -3

Query: 316 LHLQGSTLTTFSPGTSTRSVILIIVHCSLHLFYFVHVI*NARVNLFKVD 170
           LHL  +T  TFSP T+ ++ IL + H   H     H   NA    F  D
Sbjct: 93  LHLNVNT--TFSPATAAKTAILNLEH--QHPLIHTHASVNALERKFLGD 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,085,167
Number of Sequences: 5004
Number of extensions: 40134
Number of successful extensions: 112
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)