BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov12f22 (522 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 12_01_0961 + 9566730-9566998,9567096-9567187,9567294-9567427,956... 30 0.98 10_06_0010 + 9574265-9574524,9574629-9574956,9576663-9576788,957... 29 3.0 04_03_0965 - 21296608-21297165,21297332-21297682,21297781-212979... 28 4.0 07_03_1479 - 26832976-26833095,26833737-26833943,26834104-268342... 28 5.2 07_03_0836 - 21856808-21858451,21858600-21859487,21860019-21860048 27 6.9 >12_01_0961 + 9566730-9566998,9567096-9567187,9567294-9567427, 9567542-9567591,9569026-9569100,9569179-9569734 Length = 391 Score = 30.3 bits (65), Expect = 0.98 Identities = 13/33 (39%), Positives = 20/33 (60%) Frame = +1 Query: 259 RCGSKCPAKKLLVSNPASAINNTVKKSTPKINF 357 +CG +CP + L+SN S NTV +T ++ F Sbjct: 194 KCGKRCPKCRQLISNSRSCTVNTVLWNTIQLLF 226 >10_06_0010 + 9574265-9574524,9574629-9574956,9576663-9576788, 9576948-9577067,9577350-9577562,9577653-9577764, 9578033-9578217,9578310-9578660,9578826-9579383 Length = 750 Score = 28.7 bits (61), Expect = 3.0 Identities = 10/23 (43%), Positives = 14/23 (60%) Frame = +1 Query: 1 ELQRQRCSWQPYCAQHSIAARAP 69 E R +W P+C +H +A RAP Sbjct: 149 EAARFARTWVPFCRRHGVAVRAP 171 >04_03_0965 - 21296608-21297165,21297332-21297682,21297781-21297965, 21298076-21298172,21298859-21299071,21299206-21299334, 21299442-21299567,21301280-21301999 Length = 792 Score = 28.3 bits (60), Expect = 4.0 Identities = 8/16 (50%), Positives = 12/16 (75%) Frame = +1 Query: 22 SWQPYCAQHSIAARAP 69 +W P+C +H +A RAP Sbjct: 200 TWVPFCRRHGVAVRAP 215 >07_03_1479 - 26832976-26833095,26833737-26833943,26834104-26834252, 26834330-26834732,26834840-26835118,26835285-26835716, 26836362-26836838,26837171-26837212,26837285-26837545, 26837637-26838938,26839146-26839575,26839643-26840046, 26840360-26840716,26840842-26841102,26841494-26842141, 26842231-26842452,26842547-26842768,26842860-26843009, 26843739-26844111,26844467-26844689,26845167-26845425, 26845585-26845920,26846013-26846999,26848395-26849624, 26849706-26849768,26849858-26849910,26849998-26850079, 26850520-26850588,26851070-26851129,26851205-26851267, 26851993-26852101,26852742-26852827,26853120-26853847, 26854613-26854676 Length = 3716 Score = 27.9 bits (59), Expect = 5.2 Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 1/49 (2%) Frame = +3 Query: 255 MTLRVEVPGEKVVSVEPCKCNKQYSKEINTENKLSRDLKESLKK-IWRL 398 + +++EVP + V++++P +Y+KEIN L R L +K IW + Sbjct: 384 LRMKLEVPLQTVLNLQP---PLEYTKEINDYKSLIRTLVLGMKTIIWSI 429 >07_03_0836 - 21856808-21858451,21858600-21859487,21860019-21860048 Length = 853 Score = 27.5 bits (58), Expect = 6.9 Identities = 9/15 (60%), Positives = 11/15 (73%) Frame = +1 Query: 25 WQPYCAQHSIAARAP 69 W P+C +HSI RAP Sbjct: 200 WVPFCRKHSIEPRAP 214 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,099,907 Number of Sequences: 37544 Number of extensions: 235053 Number of successful extensions: 666 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 647 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 666 length of database: 14,793,348 effective HSP length: 77 effective length of database: 11,902,460 effective search space used: 1142636160 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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