Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12f22
         (522 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0961 + 9566730-9566998,9567096-9567187,9567294-9567427,956...    30   0.98 
10_06_0010 + 9574265-9574524,9574629-9574956,9576663-9576788,957...    29   3.0  
04_03_0965 - 21296608-21297165,21297332-21297682,21297781-212979...    28   4.0  
07_03_1479 - 26832976-26833095,26833737-26833943,26834104-268342...    28   5.2  
07_03_0836 - 21856808-21858451,21858600-21859487,21860019-21860048     27   6.9  

>12_01_0961 +
           9566730-9566998,9567096-9567187,9567294-9567427,
           9567542-9567591,9569026-9569100,9569179-9569734
          Length = 391

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 259 RCGSKCPAKKLLVSNPASAINNTVKKSTPKINF 357
           +CG +CP  + L+SN  S   NTV  +T ++ F
Sbjct: 194 KCGKRCPKCRQLISNSRSCTVNTVLWNTIQLLF 226


>10_06_0010 +
           9574265-9574524,9574629-9574956,9576663-9576788,
           9576948-9577067,9577350-9577562,9577653-9577764,
           9578033-9578217,9578310-9578660,9578826-9579383
          Length = 750

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 1   ELQRQRCSWQPYCAQHSIAARAP 69
           E  R   +W P+C +H +A RAP
Sbjct: 149 EAARFARTWVPFCRRHGVAVRAP 171


>04_03_0965 -
           21296608-21297165,21297332-21297682,21297781-21297965,
           21298076-21298172,21298859-21299071,21299206-21299334,
           21299442-21299567,21301280-21301999
          Length = 792

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 22  SWQPYCAQHSIAARAP 69
           +W P+C +H +A RAP
Sbjct: 200 TWVPFCRRHGVAVRAP 215


>07_03_1479 -
           26832976-26833095,26833737-26833943,26834104-26834252,
           26834330-26834732,26834840-26835118,26835285-26835716,
           26836362-26836838,26837171-26837212,26837285-26837545,
           26837637-26838938,26839146-26839575,26839643-26840046,
           26840360-26840716,26840842-26841102,26841494-26842141,
           26842231-26842452,26842547-26842768,26842860-26843009,
           26843739-26844111,26844467-26844689,26845167-26845425,
           26845585-26845920,26846013-26846999,26848395-26849624,
           26849706-26849768,26849858-26849910,26849998-26850079,
           26850520-26850588,26851070-26851129,26851205-26851267,
           26851993-26852101,26852742-26852827,26853120-26853847,
           26854613-26854676
          Length = 3716

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
 Frame = +3

Query: 255 MTLRVEVPGEKVVSVEPCKCNKQYSKEINTENKLSRDLKESLKK-IWRL 398
           + +++EVP + V++++P     +Y+KEIN    L R L   +K  IW +
Sbjct: 384 LRMKLEVPLQTVLNLQP---PLEYTKEINDYKSLIRTLVLGMKTIIWSI 429


>07_03_0836 - 21856808-21858451,21858600-21859487,21860019-21860048
          Length = 853

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 25  WQPYCAQHSIAARAP 69
           W P+C +HSI  RAP
Sbjct: 200 WVPFCRKHSIEPRAP 214


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,099,907
Number of Sequences: 37544
Number of extensions: 235053
Number of successful extensions: 666
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)