Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12f22
(522 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51838| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08) 31 0.58
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23) 30 1.0
SB_25994| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_54225| Best HMM Match : 7tm_2 (HMM E-Value=1.9e-22) 28 4.1
SB_15785| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_31097| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_15676| Best HMM Match : ResIII (HMM E-Value=4.5) 27 9.4
SB_47259| Best HMM Match : 7tm_1 (HMM E-Value=3.6) 27 9.4
SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_7013| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_4257| Best HMM Match : Collagen (HMM E-Value=0.00073) 27 9.4
>SB_51838| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08)
Length = 358
Score = 31.1 bits (67), Expect = 0.58
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 405 KITVEPFVICYVLPSVLAGLAVQNMCLEKS 494
K+ ++PF+ C+ LP A L MC EKS
Sbjct: 311 KVLLDPFIYCWRLPKYRAALRNTLMCREKS 340
>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
Length = 741
Score = 30.3 bits (65), Expect = 1.0
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +3
Query: 330 KEINTENKLSRDLKESLKKIWRLRTKIT--VEPFVICYVLPSVLAGLAVQNMCLEKSCL 500
K +N +RDL L + T I+ V P IC+ PS + QN+CL+ SCL
Sbjct: 495 KSLNASEYNTRDLLTDLLQPKYFHTSISSSVLPSFICF--PSYMIPAFGQNICLKGSCL 551
>SB_25994| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 141
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/32 (37%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = -1
Query: 159 RNLLCNCDLFDVLILLFFYNLFC-KTVYSACR 67
R + C+ + ++ +L+FF+NL+C KTV + R
Sbjct: 89 REVYCDGRISEIRLLVFFFNLYCYKTVNTVDR 120
>SB_54225| Best HMM Match : 7tm_2 (HMM E-Value=1.9e-22)
Length = 431
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/67 (26%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Frame = -3
Query: 412 VIFVRNRHIFFRDSFKSRESLFSVL-ISLLYCLLHLQGSTLTT---FSPGTSTRSVILII 245
V+F + H R + K+ LF +L I+ +++ + + T F+ ST+ +++ I
Sbjct: 303 VVFSKRGHFHIRRNLKACLVLFPILGITWSIGFVNMLDAGVVTMYLFTILNSTQGLLIFI 362
Query: 244 VHCSLHL 224
+HC+L+L
Sbjct: 363 LHCALNL 369
>SB_15785| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 600
Score = 28.3 bits (60), Expect = 4.1
Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Frame = +2
Query: 176 LK*IYSRVLNNMN-KIK*MQRTVNDNQNDAAGRSARRKSC*CRTLQVQ*TIQ*RNQHRK* 352
LK + V+N++ K++ ++ ++ N +A + ++ R +++ T+ ++H K
Sbjct: 402 LKQSSAAVINSLEAKVRDLESRLSQRSNTSASEVSSLRA---RVQELEQTLDDADEHIKK 458
Query: 353 TFARFKGISKENMAVANENHRRTVCDMLRITECASRA 463
G SKE M E RR + L +TE S A
Sbjct: 459 IETELDG-SKEQMMFLQETVRRECEERLELTEALSEA 494
>SB_31097| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 883
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +3
Query: 306 CKCNKQYSKEINTEN-KLSRDLKESLKK 386
CK +Q SKE+N++N K R+L SL K
Sbjct: 11 CKSKEQNSKELNSKNFKQKRELYTSLPK 38
>SB_15676| Best HMM Match : ResIII (HMM E-Value=4.5)
Length = 349
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 428 DMLRITECASRAGGSKYVPRKIVPSEPAV 514
D+LR+ C R GG++Y P +I AV
Sbjct: 121 DVLRVHRCHIRKGGAQYRPGRIGEDRRAV 149
>SB_47259| Best HMM Match : 7tm_1 (HMM E-Value=3.6)
Length = 392
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = +2
Query: 2 SYKDNVVRGSRTARNTASPHALLHALYTVLQNKL*KNNNIRTSKRSQLQSKFLYN 166
SYK + +GS+ A A+ + H L ++ + L N + ++ S +++ L N
Sbjct: 206 SYKKAITKGSKAADPKATAKGIAHGLLSINMDALSMNGSAPSAPASTERTRGLTN 260
>SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1304
Score = 27.1 bits (57), Expect = 9.4
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +3
Query: 291 VSVEPCKCNKQYSKEINTEN 350
V +PC CN+ YS+++ +N
Sbjct: 790 VGCQPCGCNELYSRDLQCDN 809
>SB_7013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 713
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 428 DMLRITECASRAGGSKYVPRKIVPSEPAV 514
D+LR+ C R GG++Y P +I AV
Sbjct: 538 DVLRVHRCHIRKGGAQYRPGRIGEDRRAV 566
>SB_4257| Best HMM Match : Collagen (HMM E-Value=0.00073)
Length = 863
Score = 27.1 bits (57), Expect = 9.4
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = -3
Query: 379 RDSFKSRESLFSV-LISLLYCLLHLQGSTLTTFSPGTSTRSVILIIVHCS 233
R S R++LF++ LIS +C+ H + T+S + +I+II+ S
Sbjct: 95 RSSAYQRQNLFTIILISFFFCVGHCLRAPRGTYSVIANYIIIIIIIITSS 144
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,820,255
Number of Sequences: 59808
Number of extensions: 300731
Number of successful extensions: 1016
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -