Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12f22
         (522 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74033-7|CAA98472.2|  325|Caenorhabditis elegans Hypothetical pr...    30   0.87 
U64836-1|AAX22289.1|  321|Caenorhabditis elegans Serpentine rece...    29   2.0  
AF047655-5|AAC04399.1|  820|Caenorhabditis elegans Hypothetical ...    29   2.0  
AL023837-1|CAA19499.1|  718|Caenorhabditis elegans Hypothetical ...    29   2.7  
AL022274-2|CAA18358.1|  329|Caenorhabditis elegans Hypothetical ...    28   4.7  
Z81095-2|CAB03157.1|   65|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AF063007-7|AAC16428.1|  659|Caenorhabditis elegans Hypothetical ...    27   6.2  
Z83109-6|CAB05522.1|  362|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U64836-2|AAG24060.2|  137|Caenorhabditis elegans Serpentine rece...    27   8.1  

>Z74033-7|CAA98472.2|  325|Caenorhabditis elegans Hypothetical
           protein F38B7.4 protein.
          Length = 325

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 29/96 (30%), Positives = 46/96 (47%)
 Frame = -3

Query: 367 KSRESLFSVLISLLYCLLHLQGSTLTTFSPGTSTRSVILIIVHCSLHLFYFVHVI*NARV 188
           K   S  ++   +LY + +L  S L  FSP  S  S IL+ +  +  +   ++V   A++
Sbjct: 156 KETISFTAINCYILYYVEYL--SWLPDFSPQCSGNSGILLFMAVNFAIVSVINVATFAKI 213

Query: 187 NLFKVDKIIKKFTL*LRSF*CSNIIIFLQFILQDSV 80
             FK  K   K     R     NI +F+Q +LQDS+
Sbjct: 214 --FKFYKNQNKTDKESRKRIKKNIYLFIQTVLQDSL 247


>U64836-1|AAX22289.1|  321|Caenorhabditis elegans Serpentine
           receptor, class x protein92, isoform b protein.
          Length = 321

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = -3

Query: 283 SPGTSTRSVILIIVHCSLHLFYFVHVI*NARVNLFKVDKIIKKFTL*-LRSF*CSNIIIF 107
           SPG ++    L ++ C+  +   ++ I   ++ L    K  K  T+   R   C NI+ F
Sbjct: 173 SPGCNSTENALEMIKCTFIMMAILNFITFLKI-LHSYKKSRKTETVVGARKRMCKNILCF 231

Query: 106 LQFILQDSV 80
           LQ ILQDS+
Sbjct: 232 LQTILQDSL 240


>AF047655-5|AAC04399.1|  820|Caenorhabditis elegans Hypothetical
           protein C17B7.5 protein.
          Length = 820

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 395 VANENHRRTVCDMLRITECASRAGGSKYVPRKIVPSEPAV 514
           ++ ENH +   D++R T   ++  GS YVP  +   E  V
Sbjct: 645 ISRENHVKFTYDVMRDTYSHTQLNGSSYVPYNVANIERVV 684


>AL023837-1|CAA19499.1|  718|Caenorhabditis elegans Hypothetical
           protein Y37H2C.1 protein.
          Length = 718

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 12/23 (52%), Positives = 19/23 (82%), Gaps = 1/23 (4%)
 Frame = -1

Query: 261 ASF*LSFTVRCIYFILFM-LFKT 196
           +SF  S+T+RCI+ I+F+ LF+T
Sbjct: 624 SSFTFSYTIRCIFLIVFLVLFQT 646


>AL022274-2|CAA18358.1|  329|Caenorhabditis elegans Hypothetical
           protein H24D24.2 protein.
          Length = 329

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/58 (25%), Positives = 26/58 (44%)
 Frame = +3

Query: 21  FVAAVLRATQHRRTRSYMHCTLSCKINCKKIIILEHQKDRNYRVNFFIILSTLNKFTR 194
           F  A+     ++    +   T+   IN   +I+L  +  R Y +N F+I   +  FTR
Sbjct: 25  FQQAIRPVLNYQADVKFFIATIGVSINIFHLIVLTRKSLRVYTINLFMIGIAICDFTR 82


>Z81095-2|CAB03157.1|   65|Caenorhabditis elegans Hypothetical
           protein F59F4.2 protein.
          Length = 65

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 315 NKQYSKEINTENKLSRDLKESLKKIWRLRTKITVEPFVIC 434
           NKQ+SK +N    +++ LK +  K       I +  FV+C
Sbjct: 11  NKQFSKNVNNRGNVAKSLKPAEDKYPAAPWLIGLFVFVVC 50


>AF063007-7|AAC16428.1|  659|Caenorhabditis elegans Hypothetical
           protein R119.5 protein.
          Length = 659

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 313 HLQGSTLTTFSPGTSTRSVILIIVHCSLHLFYF 215
           HL G+ L   +P T  R+V  +++  +L L +F
Sbjct: 394 HLDGANLRNTAPATENRAVQNLLIFFTLRLVFF 426


>Z83109-6|CAB05522.1|  362|Caenorhabditis elegans Hypothetical
           protein F44G3.11 protein.
          Length = 362

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -1

Query: 159 RNLLCNCDLFDVLILLFFYNLFCKTV 82
           RN+LC   LF ++++ +   ++C T+
Sbjct: 221 RNILCTISLFCIMLIQYTIIIYCATI 246


>U64836-2|AAG24060.2|  137|Caenorhabditis elegans Serpentine
           receptor, class x protein92, isoform a protein.
          Length = 137

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -3

Query: 127 CSNIIIFLQFILQDSV 80
           C NI+ FLQ ILQDS+
Sbjct: 41  CKNILCFLQTILQDSL 56


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,889,309
Number of Sequences: 27780
Number of extensions: 237223
Number of successful extensions: 746
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)