Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12f22
         (522 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    25   0.62 
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    25   0.62 
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    24   0.82 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   5.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   5.8  

>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +3

Query: 312 CNKQYSKEINTENKLSRDLKESLKKIW-RLRTK 407
           CNK   K+ +T NK+   LK    K W RL  K
Sbjct: 72  CNKCNEKQKHTANKVVNYLKTKRPKDWERLSAK 104


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +3

Query: 312 CNKQYSKEINTENKLSRDLKESLKKIW-RLRTK 407
           CNK   K+ +T NK+   LK    K W RL  K
Sbjct: 72  CNKCNEKQKHTANKVVNYLKTKRPKDWERLSAK 104


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 24.2 bits (50), Expect = 0.82
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = +3

Query: 309 KCNKQYSKEINTENKLSRDLKESLKKIWRLRTKITVEPFVICYVLPSVLAGLAVQNM 479
           +CN QY+   NTE     ++   L +   L +K T  P  + YV   +  G+ + ++
Sbjct: 107 ECNIQYALNPNTEEYYIIEVNARLSRSSALASKATGYP--LAYVAAKLALGVRLPDI 161


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +3

Query: 69  YMHCTLSCKINCKKIIIL 122
           Y  C LSC  N   IIIL
Sbjct: 102 YATCVLSCWTNIYYIIIL 119


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +3

Query: 69  YMHCTLSCKINCKKIIIL 122
           Y  C LSC  N   IIIL
Sbjct: 155 YATCVLSCWTNIYYIIIL 172


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,501
Number of Sequences: 438
Number of extensions: 3009
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)