Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12f22
         (522 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g67220.1 68414.m07651 zinc finger protein-related similar to ...    33   0.12 
At4g31100.1 68417.m04414 wall-associated kinase, putative              29   2.5  
At5g32169.1 68418.m03692 hypothetical protein                          28   3.3  
At5g18230.1 68418.m02139 transcription regulator NOT2/NOT3/NOT5 ...    28   3.3  
At5g03100.1 68418.m00258 F-box family protein contains F-box dom...    28   3.3  
At4g35470.1 68417.m05041 leucine-rich repeat family protein simi...    28   4.4  
At2g21850.1 68415.m02596 DC1 domain-containing protein contains ...    27   7.7  

>At1g67220.1 68414.m07651 zinc finger protein-related similar to
           SP|Q09472 E1A-associated protein p300 {Homo sapiens},
           SP|Q92793 CREB-binding protein {Homo sapiens}; contains
           Pfam profiles PF00569: Zinc finger ZZ type, PF00628:
           PHD-finger, PF02135: TAZ zinc finger
          Length = 1357

 Score = 33.1 bits (72), Expect = 0.12
 Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
 Frame = +3

Query: 225 KCNEQ*TIIKMTLRVEVPGEKVVSVEPCKCNKQYSKEINTEN-KLSRDLKESLKKIWRLR 401
           KCNE   + K  + V+  G  +V  EP KCN++   E+N +   L +  K ++  + R  
Sbjct: 558 KCNE---VTKCEVNVDTIGVDIV--EPMKCNEESKCEVNADTMSLQKRSKRAVSLVERF- 611

Query: 402 TKITVEPFVICYVLPSVLAGLAVQNMC 482
           T+  ++  ++    PS  +  AV+ MC
Sbjct: 612 TEEEIKLHIMSLKKPSTQS--AVEGMC 636



 Score = 28.7 bits (61), Expect = 2.5
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = +3

Query: 225 KCNEQ*TIIKMTLRVEVPGEKVVSVEPCKCNKQYSKEINTENKLSRDLKESLK 383
           KCN+   + K  + V+  G  +V  EP KCN+    E+N +  +  D+ E +K
Sbjct: 535 KCNK---VTKCEVNVDTTGVNIV--EPMKCNEVTKCEVNVDT-IGVDIVEPMK 581


>At4g31100.1 68417.m04414 wall-associated kinase, putative
          Length = 786

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 135 LFDVLILLFFYNLFCKTVYSACRSACGDAVLRAVRLP 25
           LF +L+LL  Y+    T  S+CRS CG      + +P
Sbjct: 13  LFKLLLLLILYSADL-TASSSCRSECGGCKCGGIAIP 48


>At5g32169.1 68418.m03692 hypothetical protein
          Length = 258

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 21/61 (34%), Positives = 32/61 (52%)
 Frame = -3

Query: 388 IFFRDSFKSRESLFSVLISLLYCLLHLQGSTLTTFSPGTSTRSVILIIVHCSLHLFYFVH 209
           + F  +  SR  LF + ISL   L  +Q   L +F   T   SVI++++HC  H+F   +
Sbjct: 198 VLFPQTLCSR--LFVIRISLY--LFSIQFLYLISF---TVVHSVIILLLHCCYHVFNLFN 250

Query: 208 V 206
           V
Sbjct: 251 V 251


>At5g18230.1 68418.m02139 transcription regulator NOT2/NOT3/NOT5
           family protein contains Pfam domain PF04153: NOT2 / NOT3
           / NOT5 family
          Length = 843

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 315 NKQYSKE-INTENKLSRDLKESLKKIWRLRTKI 410
           NK Y  + +N + K   DLK+ +KK+ R R +I
Sbjct: 30  NKVYDTDNVNQKEKFEADLKKEIKKLQRYRDQI 62


>At5g03100.1 68418.m00258 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 307

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
 Frame = -3

Query: 391 HIFFRDSFKSRESLFSVLISLLYCLLH----LQGSTLTTFSPG---TSTRSVILIIVHCS 233
           H  FRD+F    SL  + ++L+YC+L+    +  S+L   S      S  S+  I+  CS
Sbjct: 113 HYRFRDTFFINSSLKQLSLTLVYCILNPKCVVSWSSLRNLSLNRCKVSDDSIAKILTGCS 172

Query: 232 L 230
           L
Sbjct: 173 L 173


>At4g35470.1 68417.m05041 leucine-rich repeat family protein similar
           to Leucine-rich repeat protein SHOC-2 (Ras-binding
           protein Sur-8) (SP:Q9UQ13 ){Homo sapiens},PIR:T12704;
           contains Pfam PF00560: Leucine Rich Repeat domains
          Length = 549

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
 Frame = +3

Query: 318 KQYSKEINTENKLSRDLK---ESLKKIWRLRTKITVEPFVICYVLPSVLAGLA 467
           K+ ++EIN +NKL+  L+   +SL K+  L +    E  ++  VLP+ + GL+
Sbjct: 219 KKATQEINLQNKLTEQLEWLPDSLGKLSSLTSLDLSENHIV--VLPNTIGGLS 269


>At2g21850.1 68415.m02596 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 772

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +3

Query: 78  CTLSCKINCKKIIILEHQKDRNYRVNFFIILSTLNKFTR 194
           C +S  I C K +I   Q   N+R   F I    +K TR
Sbjct: 560 CNISFHIKCSKAVIFPQQTSHNHRFYHFWIAD--SKITR 596


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,660,899
Number of Sequences: 28952
Number of extensions: 199337
Number of successful extensions: 559
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)