Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12f20
         (331 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   1.1  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    22   1.9  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    20   7.7  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    20   7.7  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 216  VRQLSISIGLIQRLDLNWYSDLRGCG 139
            V+ L +  G++  LDL+ + +  GCG
Sbjct: 2650 VKALKLGGGMVWALDLDDFKNRCGCG 2675



 Score = 21.8 bits (44), Expect = 1.9
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -2

Query: 216  VRQLSISIGLIQRLDLNWYSDLRGC 142
            ++ + +  G+I  LDL+ + +L GC
Sbjct: 2152 IKAMGLGGGMIWALDLDDFKNLCGC 2176


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +1

Query: 220 YTPSKNIPCNQLATAQNYVASNNQYQPLISSINP 321
           Y PS        + ++N   S+N Y P I S  P
Sbjct: 37  YEPSCQYSPVSNSDSENSEVSSNSYTPKIKSCRP 70


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 143 QPRKSLYQFRSNLCIKPMDILSC 211
           +PRK L  F+++  I P   LSC
Sbjct: 94  KPRKVLPNFKTDEPICPDGKLSC 116


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 143 QPRKSLYQFRSNLCIKPMDILSC 211
           +PRK L  F+++  I P   LSC
Sbjct: 101 KPRKVLPNFKTDEPICPDGKLSC 123


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,287
Number of Sequences: 336
Number of extensions: 1089
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  6367260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)