Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12f20
         (331 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.13 |rba50||RNA polymerase II associated protein |Schizos...    27   0.73 
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    25   3.0  
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    24   5.2  
SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual    24   5.2  
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc...    23   9.0  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    23   9.0  
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy...    23   9.0  

>SPBC947.13 |rba50||RNA polymerase II associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 27.1 bits (57), Expect = 0.73
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +1

Query: 199 YTQLSNTYTPSKNIPCNQLATAQNYVASNNQYQPLISSINPNEI 330
           Y QL + Y P+  +   Q+    +   + N Y P + S++ +EI
Sbjct: 281 YEQLHDKYFPNLPVDEKQMQWLHDPSPAENSYHPSVESLHAHEI 324


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 11/48 (22%), Positives = 23/48 (47%)
 Frame = +1

Query: 187 QTNGYTQLSNTYTPSKNIPCNQLATAQNYVASNNQYQPLISSINPNEI 330
           Q +GY +  +T TP+   P  +    Q+ +     +  +  S++P E+
Sbjct: 389 QVDGYDEPLSTTTPTLIEPIQETLMTQSPIIECEPFNTVKPSVSPEEV 436


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 211 SNTYTPSKNIPCNQLATAQNYVASNN 288
           S T TPS N+P +Q + + +Y    N
Sbjct: 166 SPTNTPSPNLPVSQPSASPHYSGDKN 191


>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 253 LATAQNYVASNNQYQPLIS 309
           L  + NY+ S+N YQP +S
Sbjct: 141 LCASLNYIDSSNTYQPQLS 159


>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
           Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 220 YTPSKNIPCNQLATAQNYVASNNQYQPLISSIN 318
           Y PS ++P +   T  + V SNN    + S++N
Sbjct: 408 YNPSYDLPISHGTTHVSTVDSNNLAVSITSTVN 440


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 11/45 (24%), Positives = 18/45 (40%)
 Frame = +1

Query: 187 QTNGYTQLSNTYTPSKNIPCNQLATAQNYVASNNQYQPLISSINP 321
           ++N   ++   Y P +      L    NY  S     P IS++ P
Sbjct: 425 RSNSTGKIGKNYRPRRTYSGRLLCGPNNYEVSTIMRSPTISTVPP 469


>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -1

Query: 277 LHNFEL*LVGYKGCFWMACKC 215
           L NF   ++GY    W+ C C
Sbjct: 503 LFNFLTSIIGYGNVMWIFCGC 523


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,176,447
Number of Sequences: 5004
Number of extensions: 18836
Number of successful extensions: 50
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)