BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov12f20 (331 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 07_03_0502 + 18826595-18826660,18826815-18826885,18828963-188290... 27 3.6 04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 26 6.2 >07_03_0502 + 18826595-18826660,18826815-18826885,18828963-18829056, 18829575-18831521 Length = 725 Score = 27.1 bits (57), Expect = 3.6 Identities = 16/54 (29%), Positives = 27/54 (50%) Frame = +3 Query: 81 MLAKDEFYXXXXXXXEFFGDRNPASHCTSSDPTFVSNQWIYSAV*HLHAIQKHP 242 ++AK+E + +RN H S+ P VS+++I S V L I++ P Sbjct: 481 LIAKEEGAMFLMLLWRIWYNRNEIYHGKSAPPVSVSHRFIVSYVSSLREIKQFP 534 >04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062, 9435445-9435526,9435610-9435660,9435749-9435829, 9435965-9436006,9436117-9436215,9438130-9438201, 9438557-9438680,9438850-9439723,9440274-9440456, 9440941-9442741,9442825-9443049,9443117-9443814, 9444519-9444591 Length = 1541 Score = 26.2 bits (55), Expect = 6.2 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 2/45 (4%) Frame = +1 Query: 190 TNGYTQLSNTYTPSKNIPCNQLATAQNYVASNNQYQPL--ISSIN 318 ++G +++Y P NIPC L T++ + +PL +SS++ Sbjct: 764 SSGRDDFASSYGPPPNIPCTSLRTSKVSSLVHPSLRPLRTVSSLS 808 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 6,955,548 Number of Sequences: 37544 Number of extensions: 104898 Number of successful extensions: 173 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 173 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 173 length of database: 14,793,348 effective HSP length: 72 effective length of database: 12,090,180 effective search space used: 447336660 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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