Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12f20
         (331 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0502 + 18826595-18826660,18826815-18826885,18828963-188290...    27   3.6  
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    26   6.2  

>07_03_0502 +
           18826595-18826660,18826815-18826885,18828963-18829056,
           18829575-18831521
          Length = 725

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +3

Query: 81  MLAKDEFYXXXXXXXEFFGDRNPASHCTSSDPTFVSNQWIYSAV*HLHAIQKHP 242
           ++AK+E           + +RN   H  S+ P  VS+++I S V  L  I++ P
Sbjct: 481 LIAKEEGAMFLMLLWRIWYNRNEIYHGKSAPPVSVSHRFIVSYVSSLREIKQFP 534


>04_03_0018 -
           9434088-9434141,9434211-9434282,9434968-9435062,
           9435445-9435526,9435610-9435660,9435749-9435829,
           9435965-9436006,9436117-9436215,9438130-9438201,
           9438557-9438680,9438850-9439723,9440274-9440456,
           9440941-9442741,9442825-9443049,9443117-9443814,
           9444519-9444591
          Length = 1541

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +1

Query: 190 TNGYTQLSNTYTPSKNIPCNQLATAQNYVASNNQYQPL--ISSIN 318
           ++G    +++Y P  NIPC  L T++     +   +PL  +SS++
Sbjct: 764 SSGRDDFASSYGPPPNIPCTSLRTSKVSSLVHPSLRPLRTVSSLS 808


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,955,548
Number of Sequences: 37544
Number of extensions: 104898
Number of successful extensions: 173
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)