BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov12f20 (331 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_54629| Best HMM Match : zf-C2H2 (HMM E-Value=0) 27 3.7 SB_26853| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.7 SB_34610| Best HMM Match : DUF1400 (HMM E-Value=0.73) 27 4.9 SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.5 SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16) 26 6.5 >SB_54629| Best HMM Match : zf-C2H2 (HMM E-Value=0) Length = 1296 Score = 27.1 bits (57), Expect = 3.7 Identities = 9/23 (39%), Positives = 14/23 (60%) Frame = -1 Query: 232 WMACKC*TAEYIHWFDTKVGSEL 164 W+ACKC + E + + + K G L Sbjct: 297 WVACKCKSGEILFYHNPKTGEHL 319 >SB_26853| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 771 Score = 27.1 bits (57), Expect = 3.7 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Frame = +1 Query: 190 TNGYTQLSNTYTPSKNIPCNQLATAQNYVASNNQYQPLISS-INPN 324 TNG+ QL + P+ + P + T +++ +NN + ++ NPN Sbjct: 276 TNGHFQLDESVFPNSDSPDTRDQTVESFEINNNDFSSQENAQSNPN 321 >SB_34610| Best HMM Match : DUF1400 (HMM E-Value=0.73) Length = 357 Score = 26.6 bits (56), Expect = 4.9 Identities = 9/21 (42%), Positives = 14/21 (66%) Frame = -2 Query: 156 DLRGCGHQKIQGATDY*DKIH 94 D+RG G Q++ +D+ DK H Sbjct: 303 DIRGSGDQRVSAISDFLDKTH 323 >SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 3486 Score = 26.2 bits (55), Expect = 6.5 Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 1/39 (2%) Frame = +1 Query: 187 QTNG-YTQLSNTYTPSKNIPCNQLATAQNYVASNNQYQP 300 QTNG Y LSNTY+P+ NQ T Y +N Y P Sbjct: 2899 QTNGTYQTLSNTYSPA-----NQ--TNGTYQTHSNTYSP 2930 >SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16) Length = 2352 Score = 26.2 bits (55), Expect = 6.5 Identities = 9/18 (50%), Positives = 12/18 (66%) Frame = -1 Query: 244 KGCFWMACKC*TAEYIHW 191 +GC +M CKC +IHW Sbjct: 2116 EGCSYMGCKC--GAHIHW 2131 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 8,336,483 Number of Sequences: 59808 Number of extensions: 124368 Number of successful extensions: 238 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 215 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 238 length of database: 16,821,457 effective HSP length: 72 effective length of database: 12,515,281 effective search space used: 463065397 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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