Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12f20
         (331 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54629| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     27   3.7  
SB_26853| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.7  
SB_34610| Best HMM Match : DUF1400 (HMM E-Value=0.73)                  27   4.9  
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.5  
SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16)                      26   6.5  

>SB_54629| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1296

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 232 WMACKC*TAEYIHWFDTKVGSEL 164
           W+ACKC + E + + + K G  L
Sbjct: 297 WVACKCKSGEILFYHNPKTGEHL 319


>SB_26853| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 771

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 190 TNGYTQLSNTYTPSKNIPCNQLATAQNYVASNNQYQPLISS-INPN 324
           TNG+ QL  +  P+ + P  +  T +++  +NN +    ++  NPN
Sbjct: 276 TNGHFQLDESVFPNSDSPDTRDQTVESFEINNNDFSSQENAQSNPN 321


>SB_34610| Best HMM Match : DUF1400 (HMM E-Value=0.73)
          Length = 357

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 156 DLRGCGHQKIQGATDY*DKIH 94
           D+RG G Q++   +D+ DK H
Sbjct: 303 DIRGSGDQRVSAISDFLDKTH 323


>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3486

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +1

Query: 187  QTNG-YTQLSNTYTPSKNIPCNQLATAQNYVASNNQYQP 300
            QTNG Y  LSNTY+P+     NQ  T   Y   +N Y P
Sbjct: 2899 QTNGTYQTLSNTYSPA-----NQ--TNGTYQTHSNTYSP 2930


>SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16)
          Length = 2352

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 244  KGCFWMACKC*TAEYIHW 191
            +GC +M CKC    +IHW
Sbjct: 2116 EGCSYMGCKC--GAHIHW 2131


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,336,483
Number of Sequences: 59808
Number of extensions: 124368
Number of successful extensions: 238
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 463065397
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)