Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12f20
         (331 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p...    27   2.4  
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p...    27   2.4  
Z81015-3|CAB02656.1|  266|Caenorhabditis elegans Hypothetical pr...    26   5.5  
U80845-1|AAK39181.1| 1217|Caenorhabditis elegans Prion-like-(q/n...    25   9.7  
AL031627-15|CAA20966.1|  318|Caenorhabditis elegans Hypothetical...    25   9.7  

>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical protein
             K07E12.1a protein.
          Length = 13100

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = -1

Query: 79    IVFIVKNSKRSIDYTIAVKT 20
             IV IVKN K S DY+ AVK+
Sbjct: 12269 IVLIVKNGKASDDYSSAVKS 12288


>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin protein.
          Length = 13100

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = -1

Query: 79    IVFIVKNSKRSIDYTIAVKT 20
             IV IVKN K S DY+ AVK+
Sbjct: 12269 IVLIVKNGKASDDYSSAVKS 12288


>Z81015-3|CAB02656.1|  266|Caenorhabditis elegans Hypothetical
           protein C11E4.4 protein.
          Length = 266

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +1

Query: 190 TNGYTQLSNTYTPSKNIPCNQLATAQNYVASNNQYQPLISSIN 318
           T  +   +N Y P KNI    +AT    V + N   P+ + I+
Sbjct: 137 TMTFDNSTNIYPPEKNISKEHIATLSRRVIATNPPSPVSTVID 179


>U80845-1|AAK39181.1| 1217|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 15
            protein.
          Length = 1217

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 196  GYTQLSNTYTPSKNIPCNQ 252
            GY    N  TP KN+P NQ
Sbjct: 1139 GYPPNQNKVTPGKNVPKNQ 1157


>AL031627-15|CAA20966.1|  318|Caenorhabditis elegans Hypothetical
           protein Y102A5C.25 protein.
          Length = 318

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 286 YCSLHNFEL*LVGYKGCFWMAC 221
           Y +L NF+L L+G  G  + AC
Sbjct: 12  YSNLKNFDLILIGLYGLLFFAC 33


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,307,038
Number of Sequences: 27780
Number of extensions: 100318
Number of successful extensions: 217
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 397381406
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)