BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov12f20 (331 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 27 2.4 AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 27 2.4 Z81015-3|CAB02656.1| 266|Caenorhabditis elegans Hypothetical pr... 26 5.5 U80845-1|AAK39181.1| 1217|Caenorhabditis elegans Prion-like-(q/n... 25 9.7 AL031627-15|CAA20966.1| 318|Caenorhabditis elegans Hypothetical... 25 9.7 >U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical protein K07E12.1a protein. Length = 13100 Score = 27.5 bits (58), Expect = 2.4 Identities = 13/20 (65%), Positives = 15/20 (75%) Frame = -1 Query: 79 IVFIVKNSKRSIDYTIAVKT 20 IV IVKN K S DY+ AVK+ Sbjct: 12269 IVLIVKNGKASDDYSSAVKS 12288 >AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin protein. Length = 13100 Score = 27.5 bits (58), Expect = 2.4 Identities = 13/20 (65%), Positives = 15/20 (75%) Frame = -1 Query: 79 IVFIVKNSKRSIDYTIAVKT 20 IV IVKN K S DY+ AVK+ Sbjct: 12269 IVLIVKNGKASDDYSSAVKS 12288 >Z81015-3|CAB02656.1| 266|Caenorhabditis elegans Hypothetical protein C11E4.4 protein. Length = 266 Score = 26.2 bits (55), Expect = 5.5 Identities = 13/43 (30%), Positives = 20/43 (46%) Frame = +1 Query: 190 TNGYTQLSNTYTPSKNIPCNQLATAQNYVASNNQYQPLISSIN 318 T + +N Y P KNI +AT V + N P+ + I+ Sbjct: 137 TMTFDNSTNIYPPEKNISKEHIATLSRRVIATNPPSPVSTVID 179 >U80845-1|AAK39181.1| 1217|Caenorhabditis elegans Prion-like-(q/n-rich)-domain-bearingprotein protein 15 protein. Length = 1217 Score = 25.4 bits (53), Expect = 9.7 Identities = 10/19 (52%), Positives = 11/19 (57%) Frame = +1 Query: 196 GYTQLSNTYTPSKNIPCNQ 252 GY N TP KN+P NQ Sbjct: 1139 GYPPNQNKVTPGKNVPKNQ 1157 >AL031627-15|CAA20966.1| 318|Caenorhabditis elegans Hypothetical protein Y102A5C.25 protein. Length = 318 Score = 25.4 bits (53), Expect = 9.7 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = -1 Query: 286 YCSLHNFEL*LVGYKGCFWMAC 221 Y +L NF+L L+G G + AC Sbjct: 12 YSNLKNFDLILIGLYGLLFFAC 33 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 6,307,038 Number of Sequences: 27780 Number of extensions: 100318 Number of successful extensions: 217 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 210 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 217 length of database: 12,740,198 effective HSP length: 72 effective length of database: 10,740,038 effective search space used: 397381406 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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